Browse Element(s) Details


Os.27002.1.S1_at

Description gb:CB632700
DB_XREF= gi:29627689
DB_XREF=OSIIEb11B21.r
CLONE=OSIIEb11B21
TID=Os.27002.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27002 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g388701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38840Os.26858.1.S1_at7/112+23474452..23480943Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
LOC_Os02g38850NANA2+23489131..23489418hypothetical protein
LOC_Os02g38860OsAffx.2909.1.S1_at8/112+23489748..23490195expressed protein
LOC_Os02g38870Os.27002.1.S1_at1/112+23501437..23501850hypothetical protein
LOC_Os02g38880OsAffx.24639.1.S1_at11/112+23502579..23503181hypothetical protein
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27002.1.S1_at--154--2591Chr09:2291035..2291059 (25 bp)
AACGATGGCGGCATTCGCATGATCT
NONE
Os.27002.1.S1_at--302--4131Chr09:2291050..2291074 (25 bp)
CGCATGATCTCCTCTGATGAGCTAT
NONE
Os.27002.1.S1_at--604--1531Chr09:2291078..2291102 (25 bp)
AGCATGTGGCTGCATCAGATCGCCT
NONE
Os.27002.1.S1_at--1159--3411NONE
CAGATCGCCTAAAACACCCTATTAA
NONE
Os.27002.1.S1_at--447--971Chr09:2291223..2291247 (25 bp)
AGGAGCCTAAGCTGGAGCACGACAA
NONE
Os.27002.1.S1_at--872--1071NONE
AGGGACATTGCATGGCTGGTTCTGC
NONE
Os.27002.1.S1_at--692--5032Chr09:2291279..2291303 (25 bp)
GCAACTTCCAATCTCGGGTCAGAGA
NONE
Os.27002.1.S1_at--29--531Chr09:2291447..2291471 (25 bp)
ATCGACGCATGATGCAGTCTCCACT
NONE
Os.27002.1.S1_at--1108--9471Chr09:2291492..2291516 (25 bp)
TCTGCATAGCGCCATCTACATTGTC
NONE
Os.27002.1.S1_at--684--2071Chr09:2291509..2291533 (25 bp)
ACATTGTCGCCGCAAGTGCTAGATG
NONE
Os.27002.1.S1_at--825--10592Chr09:2291543..2291567 (25 bp)
TTCGGCTCTAAAGGGCAAACTCGTC
NONE
Target Sequence 
AACGATGGCGGCATTCGCATGATCTCCTCTGATGAGCTATGCAAGCATGTGGCTGCATCAGATCGCCTAAAACACCCTAT
TAATAAATTGAGAACAACAAAAGATTTTGCCACCAATCCAGCTGAGGATTCGGGATGGAGGGAGGGCACGCCAGGATGGT
GTTGATGATGAGGCTGGAGAGGAGGAAGAGGAGCCTAAGCTGGAGCACGACAAGCATGAGGGACATTGCATGGCTGGTTC
TGCCGCAACTTCCAATCTCGGGTCAGAGATTTGAGGGGGGCAAAAGGCCGAGGATTTTGGCCGGCTGCTCACCCCGAGCG
CCCCTCTCCAGCTCCTCCAGTGGGGGCGGTGGCTCAGCAAGTGGTGGATGGCAATGAATCTGCCGGCGATGAGAGGAGAC
GAGGAGATGGACATCGACGCATGATGCAGTCTCCACTGCTCCGCCATGGATCTGTCCTCTGCATAGCGCCATCTACATTG
TCGCCGCAAGTGCTAGATGGGGAAACAATTCGGCTCTAAAGGGCAAACTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis