Browse Element(s) Details


OsAffx.12401.1.S1_at

Description tigr:9630.m03744
TID=OsAffx.12401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3895011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12401.1.S1_at--342--5331Chr02:23533793..23533817 (25 bp)
GAAGTCATCTGGTTGTAAGCCTGAT
LOC_Os02g38950
OsAffx.12401.1.S1_at--502--3871Chr02:23533813..23533837 (25 bp)
CTGATACACTATTCTACAACTCCTT
LOC_Os02g38950
OsAffx.12401.1.S1_at--584--2551Chr02:23533830..23533854 (25 bp)
AACTCCTTGATCAACCTTCTTGGTA
LOC_Os02g38950
OsAffx.12401.1.S1_at--236--2271Chr02:23533854..23533878 (25 bp)
AAATCAGGCCATTTGTTCGAGGCTT
LOC_Os02g38950
OsAffx.12401.1.S1_at--507--6191Chr02:23533872..23533896 (25 bp)
GAGGCTTCCCAAGTATTTCGAGTGG
LOC_Os02g38950
OsAffx.12401.1.S1_at--433--8711Chr02:23533915..23533939 (25 bp)
TGTCCCATAATCTGGCTACCTATAA
LOC_Os02g38950
OsAffx.12401.1.S1_at--907--9731Chr02:23533950..23533974 (25 bp)
TCAATCTTTTGCTACTACGGTCGAG
LOC_Os02g38950
OsAffx.12401.1.S1_at--779--711Chr02:23533978..23534002 (25 bp)
ATGATGCTCTCAATGTGCTGAAAGA
LOC_Os02g38950
OsAffx.12401.1.S1_at--512--8951Chr02:23534027..23534051 (25 bp)
TGACATTCAGTCATATCGGCCGCTT
LOC_Os02g38950
OsAffx.12401.1.S1_at--923--5351Chr02:23534071..23534095 (25 bp)
GAAGAGGCCAAGCTGATACCGTCCG
LOC_Os02g38950
OsAffx.12401.1.S1_at--240--9971Chr02:23534087..23534111 (25 bp)
TACCGTCCGGCACTTGTTGAGTGAA
LOC_Os02g38950
Target Sequence 
GAAGTCATCTGGTTGTAAGCCTGATACACTATTCTACAACTCCTTGATCAACCTTCTTGGTAAATCAGGCCATTTGTTCG
AGGCTTCCCAAGTATTTCGAGTGGAAATGCCAATGAATGGTGTGTCCCATAATCTGGCTACCTATAACACCATGATTTCA
ATCTTTTGCTACTACGGTCGAGATGATGATGCTCTCAATGTGCTGAAAGAAATGGAAGCACAATCTTGTAAGCCTGACAT
TCAGTCATATCGGCCGCTTCTTAGACTTTTTTTAAGCAGAAGAGGCCAAGCTGATACCGTCCGGCACTTGTTGAGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis