Browse Element(s) Details


Os.47926.1.S1_at

Description gb:AK100041.1
DB_XREF= gi:32985250
TID=Os.47926.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151O17, full insert sequence.
FL= gb:AK100041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47926.1.S1_at--637--8011Chr02:23542853..23542877 (25 bp)
GGAGGCTGATCAACATCTGCTTCGG
LOC_Os02g38970
Os.47926.1.S1_at--746--7591Chr02:23542912..23542936 (25 bp)
GGGCAGCAGACCAGCAAGATGTTCA
LOC_Os02g38970
Os.47926.1.S1_at--995--1511Chr02:23542937..23542961 (25 bp)
AGCAGCAGTGCCTCAGGGTGTCCTG
LOC_Os02g38970
Os.47926.1.S1_at--369--6111Chr02:23542968..23542992 (25 bp)
GAGTGACTCACACGCGCACACGGTA
LOC_Os02g38970
Os.47926.1.S1_at--751--3291Chr02:23542984..23543008 (25 bp)
CACACGGTATAATTAGCCTGCTTTT
LOC_Os02g38970
Os.47926.1.S1_at--45--7871Chr02:23543058..23543082 (25 bp)
GGTTTCTGCATGTTGAACTCGTCGG
LOC_Os02g38970
Os.47926.1.S1_at--513--2531Chr02:23543073..23543097 (25 bp)
AACTCGTCGGGCTTGTGTGGATTTT
LOC_Os02g38970
Os.47926.1.S1_at--684--10831Chr02:23543085..23543109 (25 bp)
TTGTGTGGATTTTGTTGGCTGCTGC
LOC_Os02g38970
Os.47926.1.S1_at--1162--7431Chr02:23543110..23543134 (25 bp)
GTGTAACCGTATCCTTGCGTGGCGT
LOC_Os02g38970
Os.47926.1.S1_at--419--8631Chr02:23543149..23543173 (25 bp)
TGGGCTTGTGTTAACGCCTTAACGG
LOC_Os02g38970
Os.47926.1.S1_at--155--4451Chr02:23543164..23543188 (25 bp)
GCCTTAACGGCTTACTTCGATGCAA
LOC_Os02g38970
Target Sequence 
GGAGGCTGATCAACATCTGCTTCGGCGCGCAGGGCCTCACCGTGGAGGACTCGGCCAGCGGGCAGCAGACCAGCAAGATG
TTCAAGCAGCAGTGCCTCAGGGTGTCCTGACTCCCGAGTGACTCACACGCGCACACGGTATAATTAGCCTGCTTTTCTTT
GGTTTTCTGACTCGAATTGAGCTTGCAGTTCAACGGAACATATATGGTTTCTGCATGTTGAACTCGTCGGGCTTGTGTGG
ATTTTGTTGGCTGCTGCGTGTAACCGTATCCTTGCGTGGCGTGCTTGGTTTCTGGTTGGGCTTGTGTTAACGCCTTAACG
GCTTACTTCGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis