Browse Element(s) Details


OsAffx.24640.1.S1_at

Description tigr:9630.m03745
TID=OsAffx.24640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3894011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38890Os.57152.1.S1_at10/112+23507283..23508246hypothetical protein
LOC_Os02g38890OsAffx.12399.1.S1_at8/112+23507283..23508246hypothetical protein
LOC_Os02g38900Os.9186.1.S1_at11/112+23508755..23511664Nucleotide-binding protein 1, putative, expressed
LOC_Os02g38910OsAffx.2910.1.S1_at11/112+23513720..23514682hypothetical protein
LOC_Os02g38910OsAffx.22604.1.S1_x_at1/112+23513720..23514682hypothetical protein
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24640.1.S1_at--298--2071Chr02:23529810..23529834 (25 bp)
ACTTGGCAAGCCTGACGTACCTAAA
LOC_Os02g38940
OsAffx.24640.1.S1_at--956--9471Chr02:23529737..23529761 (25 bp)
TCTCCCGAGGGAGTGTCGTCAAACA
LOC_Os02g38940
OsAffx.24640.1.S1_at--702--8231Chr02:23529682..23529706 (25 bp)
GGCACCACCGTGTTCGTTAACGTAT
LOC_Os02g38940
OsAffx.24640.1.S1_at--794--4631Chr02:23529655..23529679 (25 bp)
GCGATTAACAGAGACCCTAGGCACT
LOC_Os02g38940
OsAffx.24640.1.S1_at--890--6751Chr02:23529614..23529638 (25 bp)
GTTCAAGCCGGAACGGTTTCACAGT
LOC_Os02g38940
OsAffx.24640.1.S1_at--230--10711Chr02:23529527..23529551 (25 bp)
TTGCCCTGGCATGACATTCGGACAT
LOC_Os02g38940
OsAffx.24640.1.S1_at--419--10751Chr02:23529483..23529507 (25 bp)
TTGCAATGCTTCTGTACCACTTCGA
LOC_Os02g38940
OsAffx.24640.1.S1_at--1034--9291Chr02:23529450..23529474 (25 bp)
TCCCTAAAGGAGTTGCACCGAACGA
LOC_Os02g38940
OsAffx.24640.1.S1_at--299--10431Chr02:23529374..23529398 (25 bp)
TTATCTGCATCCTATAGTCCGTGTG
LOC_Os02g38940
OsAffx.24640.1.S1_at--323--7471Chr02:23529354..23529378 (25 bp)
GTGTGCCCTTGGAACAAGCTACTAT
LOC_Os02g38940
OsAffx.24640.1.S1_at--653--1571Chr02:23529338..23529362 (25 bp)
AGCTACTATGTCGTAGTTGTGCTAC
LOC_Os02g38940
Target Sequence 
ACTTGGCAAGCCTGACGTACCTAAAGCTTGTCATCAAGGAGACCCTGAGGCTTCATCCCGTGGTGCCATTGCTTCTCCCG
AGGGAGTGTCGTCAAACATGCAAGGTCATGGGGTACGATGTGCCTCAAGGCACCACCGTGTTCGTTAACGTATGGGCGAT
TAACAGAGACCCTAGGCACTGGGATGAGCCTGAGGTGTTCAAGCCGGAACGGTTTCACAGTGGAAAGATCGACTTTAAAG
GTGCAAATTTCGAGTATATACCGTTTGGTGCGGGTAGGAGGATTTGCCCTGGCATGACATTCGGACATGCTACCGTGGAG
CTCATGCTTGCAATGCTTCTGTACCACTTCGACTGGGAGCTCCCTAAAGGAGTTGCACCGAACGAACTAGACATGACAGA
GGAGATGGGCATCACTGTGGGTAGGAAGAATGCTCTTTATCTGCATCCTATAGTCCGTGTGCCCTTGGAACAAGCTACTA
TGTCGTAGTTGTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis