Browse Element(s) Details


Os.49663.1.S1_at

Description gb:AK103400.1
DB_XREF= gi:32988609
TID=Os.49663.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128B04, full insert sequence.
FL= gb:AK103400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3900011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49663.1.S1_at--568--1171Chr02:23554874..23555350 (25 bp)
AGTACATGGCCAGGTACAGGCGCGA
LOC_Os02g39000
Os.49663.1.S1_at--723--2111Chr02:23555341..23555365 (25 bp)
ACAGGCGCGAGGAGATGAGAATCCA
LOC_Os02g39000
Os.49663.1.S1_at--824--4771Chr02:23555636..23555660 (25 bp)
GCTGCTGTGCCGCTGAGAAAAATCC
LOC_Os02g39000
Os.49663.1.S1_at--522--8891Chr02:23555649..23555673 (25 bp)
TGAGAAAAATCCACTGCCACAGTCA
LOC_Os02g39000
Os.49663.1.S1_at--250--2131Chr02:23555667..23555691 (25 bp)
ACAGTCAAAAGGCTCGTGATCGATC
LOC_Os02g39000
Os.49663.1.S1_at--141--7411Chr02:23555682..23555706 (25 bp)
GTGATCGATCTGAGAGTTTCCGCTG
LOC_Os02g39000
Os.49663.1.S1_at--1016--1331Chr02:23555694..23555718 (25 bp)
AGAGTTTCCGCTGCTTGTTGAAGGC
LOC_Os02g39000
Os.49663.1.S1_at--466--5291Chr02:23555713..23555737 (25 bp)
GAAGGCGGTTTCTGATGTACTACTA
LOC_Os02g39000
Os.49663.1.S1_at--698--7011Chr02:23555729..23555753 (25 bp)
GTACTACTAGTACCAGGCACAGAAG
LOC_Os02g39000
Os.49663.1.S1_at--1011--5211Chr02:23555753..23555777 (25 bp)
GAATTTTATCTTTGTACCATCAATG
LOC_Os02g39000
Os.49663.1.S1_at--439--9972Chr02:23555767..23555791 (25 bp)
TACCATCAATGAAGACCCGTTTAGT
LOC_Os02g39000
Target Sequence 
AGTACATGGCCAGGTACAGGCGCGAGGAGATGAGAATCCAGGCGTGGGAGAACCGGGAGCGGCGGAAGGCGGAGCTGCAG
ATGCGGACGGCGGAGGAGAAGGCCGAGCGGATGAGGCTGCGCGCGCAGGCGAGGACGGCGGGGAAGCTGGCGACGGCGCA
GGCGGAGGCCAAGGCGCGGCGCGCGCGCGCCGAGGCCGAGCTGGCGCTGGGCCGCCCGGGAGGCGGTGCCAAGGGTTGGC
TGCTNCACGCGGAGCGCGAGCTGGAGNCAGCGGCAGCGGCCGCTCGCCCTCCTCTCTCTCGCTCCGGTTGCCGCTGCTGT
GCCGCTGAGAAAAATCCACTGCCACAGTCAAAAGGCTCGTGATCGATCTGAGAGTTTCCGCTGCTTGTTGAAGGCGGTTT
CTGATGTACTACTAGTACCAGGCACAGAAGAATTTTATCTTTGTACCATCAATGAAGACCCGTTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis