Browse Element(s) Details


Os.35065.1.S1_at

Description gb:AK069111.1
DB_XREF= gi:32979135
TID=Os.35065.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007P20, full insert sequence.
FL= gb:AK069111.1 gb:AK059178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3904011/11mitochondrial transcription termination factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35065.1.S1_at--953--2051Chr02:23571811..23571835 (25 bp)
ACTTCCAGTCAATCGGTGCGGATGC
LOC_Os02g39040
Os.35065.1.S1_at--1042--7971Chr02:23571830..23571854 (25 bp)
GGATGCTGCGTCTCTTATTCAGAAA
LOC_Os02g39040
Os.35065.1.S1_at--2--1671Chr02:23571855..23571879 (25 bp)
AGCCCACAGGCTTTTGGTCTGAACA
LOC_Os02g39040
Os.35065.1.S1_at--764--9671Chr02:23571928..23571952 (25 bp)
TCACCATGGAGGAAATCGGCACTAT
LOC_Os02g39040
Os.35065.1.S1_at--459--10851Chr02:23571964..23571988 (25 bp)
TTGGGATTATTCACACTCTCAGCAT
LOC_Os02g39040
Os.35065.1.S1_at--929--3111Chr02:23572057..23572081 (25 bp)
AATTTCCACAATACTTCGGGTACAG
LOC_Os02g39040
Os.35065.1.S1_at--1133--2351Chr02:23572097..23572121 (25 bp)
AAAGCCTCGGTATGCTCGGATGATT
LOC_Os02g39040
Os.35065.1.S1_at--590--5431Chr02:23572145..23572169 (25 bp)
GAACCAGCTGTTGTCAGTTTCAGAT
LOC_Os02g39040
Os.35065.1.S1_at--1022--9811Chr02:23572261..23572285 (25 bp)
TAACAAGACTTGATCGCTGCCCTGG
LOC_Os02g39040
Os.35065.1.S1_at--780--5591Chr02:23572317..23572341 (25 bp)
GAAATTTGTACTTAGCCATGCTTGG
LOC_Os02g39040
Os.35065.1.S1_at--280--3531Chr02:23572333..23572357 (25 bp)
CATGCTTGGCAGCTGACCAATTGTT
LOC_Os02g39040
Target Sequence 
ACTTCCAGTCAATCGGTGCGGATGCTGCGTCTCTTATTCAGAAAAGCCCACAGGCTTTTGGTCTGAACATTGAGGCAAAG
CTAAAACCGATCACAGAATTTTTCCTGGAGAGAGACTTCACCATGGAGGAAATCGGCACTATGGCGAATAGATTTGGGAT
TATTCACACTCTCAGCATGGAAGATAATCTGCTTCCCAAATATGAATATTTCCTGACAATGGGATACCCAAGGAACGAGC
TAGTGAAATTTCCACAATACTTCGGGTACAGTTTAGAACAGCGGATAAAGCCTCGGTATGCTCGGATGATTGATTGCGGA
GTGAGGTTGATTTTGAACCAGCTGTTGTCAGTTTCAGATAGCAGATTTGAAGATATTCTACGGAAGAGGATGGATGGAAT
ATGAGATGGTCATAATTTCGGATAACCATGGTTTAGGACAATCTCATTTGTAACAAGACTTGATCGCTGCCCTGGTANAN
ANNTTATCAGAACAAGTAGTGTCCTGGAAATTTGTACTTAGCCATGCTTGGCAGCTGACCAATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis