Browse Element(s) Details


OsAffx.12403.1.S1_s_at

Description tigr:9630.m03754
TID=OsAffx.12403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3907011/11Got1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39080Os.27442.1.A1_at6/112+23600664..23601421expressed protein
LOC_Os02g39090NANA2+23603431..23604774Protein kinase domain containing protein, expressed
LOC_Os02g39100OsAffx.24643.1.S1_s_at11/112+23606150..23608548Leucine Rich Repeat family protein, expressed
LOC_Os02g39110NANA2+23611877..23618032retrotransposon protein, putative, unclassified
LOC_Os02g39120Os.28943.1.S1_x_at1/112+23618665..23621930transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12403.1.S1_s_at--829--3891Chr02:23594220..23594244 (25 bp)
CTGGTGGGCTTTGGCATCCTATTCT
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--407--571Chr02:23594235..23594259 (25 bp)
ATCCTATTCTCATTCTTTGGCGTTA
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--182--3691Chr02:23594249..23594273 (25 bp)
CTTTGGCGTTATCCTTTTCTTTGAT
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--707--8271Chr02:23594277..23594297 (21 bp)
GGCTTGTTGGCGTTGGGTAATATTT
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--938--8191Chr02:23594285..23594404 (25 bp)
GGCGTTGGGTAATATTTTCTTCTTG
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--104--10311Chr02:23594395..23594419 (25 bp)
TTTCTTCTTGACTGGAATCGGCTTG
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--904--3051Chr02:23594410..23594434 (25 bp)
AATCGGCTTGTTGCTTGGTTGGCAA
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--801--8511Chr02:23594429..23594453 (25 bp)
TGGCAATCTATGTGGCAGCTTTTCA
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--888--1091Chr02:23595162..23595186 (25 bp)
AGTGGTTATGGACCTCCTATCCAGG
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--357--3631Chr02:23595188..23595212 (25 bp)
CTTCCTATACCAGATTCCAGTCATT
LOC_Os02g39070
OsAffx.12403.1.S1_s_at--1143--4331Chr02:23595204..23595228 (25 bp)
CCAGTCATTGGATGGATTCTGCAAT
LOC_Os02g39070
Target Sequence 
CTGGTGGGCTTTGGCATCCTATTCTCATTCTTTGGCGTTATCCTTTTCTTTGATAGGGGCTTGTTGGCGTTGGGTAATAT
TTTCTTCTTGACTGGAATCGGCTTGTTGCTTGGTTGGCAATCTATGTGGCAGCTTTTCACAAAGAAGGCAAACATTAAGT
GGTTATGGACCTCCTATCCAGGCCTTCCTATACCAGATTCCAGTCATTGGATGGATTCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12403.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis