Browse Element(s) Details


Os.51940.1.S1_x_at

Description gb:AK064340.1
DB_XREF= gi:32974358
TID=Os.51940.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H03, full insert sequence.
FL= gb:AK064340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3905011/11Isy1-like splicing family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51940.1.S1_x_at--1131--8191Chr02:23574025..23574049 (25 bp)
GGAAGGAGTTTATCGCGCATGTGCC
LOC_Os02g39050
Os.51940.1.S1_x_at--23--5011Chr02:23574009..23574033 (25 bp)
GCATGTGCCGCTACCCGATGAGAAG
LOC_Os02g39050
Os.51940.1.S1_x_at--743--971Chr02:23573893..23573917 (25 bp)
AGGAGATGCTCAATGTGCGCCGCTA
LOC_Os02g39050
Os.51940.1.S1_x_at--921--5331Chr02:23572857..23572881 (25 bp)
GAAGTACAACGAACACCCATGCGAT
LOC_Os02g39050
Os.51940.1.S1_x_at--952--2911Chr02:23572808..23572832 (25 bp)
AAGGAGGAGCCCGTTTTGCAGCGCA
LOC_Os02g39050
Os.51940.1.S1_x_at--335--3391Chr02:23572773..23572797 (25 bp)
CAGCCCTGGCAAACATCTGTTGTTA
LOC_Os02g39050
Os.51940.1.S1_x_at--789--4911Chr02:23572735..23572759 (25 bp)
GCTTCCCTGTGTTTTATCCATTTTA
LOC_Os02g39050
Os.51940.1.S1_x_at--338--2371Chr02:23572655..23572679 (25 bp)
AAACCAGAGTTCTAGTGCACTGCAT
LOC_Os02g39050
Os.51940.1.S1_x_at--887--1971Chr02:23572637..23572661 (25 bp)
ACTGCATGCTTTTAGTGTACTCTCT
LOC_Os02g39050
Os.51940.1.S1_x_at--304--271Chr02:23572560..23572584 (25 bp)
ATATGTACTTCGTCTGTTTTCCGGC
LOC_Os02g39050
Os.51940.1.S1_x_at--378--6811Chr02:23572545..23572569 (25 bp)
GTTTTCCGGCTTCTATGATGTGCAA
LOC_Os02g39050
Target Sequence 
GGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAG
CTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGA
GAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGAC
GCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAA
GAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACAT
NTTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTT
CTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51940.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis