Browse Element(s) Details


Os.48062.1.S1_s_at

Description gb:BI809512
DB_XREF= gi:15856700
DB_XREF=F011B05
CLONE=F011B05
TID=Os.48062.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48062 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3898011/11global transcription factor group E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48062.1.S1_s_at--552--10071Chr02:23543606..23543630 (25 bp)
TAGTGATCCAGGTGCTAAAGCTCCC
LOC_Os02g38980
Os.48062.1.S1_s_at--935--1031Chr02:23543597..23543621 (25 bp)
AGGTGCTAAAGCTCCCAGCGGCAAA
LOC_Os02g38980
Os.48062.1.S1_s_at--112--6691Chr02:23543568..23543592 (25 bp)
GTTGCCCAGCGGCTTATAGATTTTT
LOC_Os02g38980
Os.48062.1.S1_s_at--962--4691Chr02:23543560..23543584 (25 bp)
GCGGCTTATAGATTTTTCGTTCGTT
LOC_Os02g38980
Os.48062.1.S1_s_at--554--71Chr02:23543510..23543534 (25 bp)
ATTGCTTCCTGCTGTAAATTCGAAT
LOC_Os02g38980
Os.48062.1.S1_s_at--968--4911Chr02:23543507..23543531 (25 bp)
GCTTCCTGCTGTAAATTCGAATTTT
LOC_Os02g38980
Os.48062.1.S1_s_at--184--4111Chr02:23543490..23543514 (25 bp)
CGAATTTTGATGTAGTGGAGGAAGC
LOC_Os02g38980
Os.48062.1.S1_s_at--1012--1631Chr02:23543468..23543492 (25 bp)
AGCGATAGTTGTTTGCTGGGCATAT
LOC_Os02g38980
Os.48062.1.S1_s_at--881--931Chr02:23543435..23543459 (25 bp)
AGGAAAAAGCTTCTGCTTTTCTTGT
LOC_Os02g38980
Os.48062.1.S1_s_at--725--5511Chr02:23543393..23543417 (25 bp)
GAAAATTCATGCGTCTTTTAGCGCA
LOC_Os02g38980
Os.48062.1.S1_s_at--1042--731Chr02:23543349..23543373 (25 bp)
ATGTTTGTCGACTGTTTGTTGTGGA
LOC_Os02g38980
Target Sequence 
TAGTGATCCAGGTGCTAAAGCTCCCAGCGGCAAANGGTGTTGCCCAGCGGCTTATAGATTTTTCGTTCGTTCTTCTCTAG
TTTTGGGTTTGTCCNATTGCTTCCTGCTGTAAATTCGAATTTTGATGTAGTGGAGGAAGCGATAGTTGTTTGCTGGGCAT
ATGGGCNAATAGGAAAAAGCTTCTGCTTTTCTTGTTTACNNNGNGAAAAAAAAGAAAATTCATGCGTCTTTTAGCGCANT
TTGTTGTCTCCTGTCTGATGTTTGTCGACTGTTTGTTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48062.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis