Browse Element(s) Details


Os.11803.1.A1_at

Description gb:AU056598
DB_XREF= gi:4715481
DB_XREF=AU056598
CLONE=S20720_2Z
TID=Os.11803.1
CNT=15
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11803 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3901011/11PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11803.1.A1_at--566--5551Chr02:23562519..23562543 (25 bp)
GAAACGTATCCATGACAGTCACACT
LOC_Os02g39010
Os.11803.1.A1_at--419--1431Chr02:23562574..23562598 (25 bp)
AGAACAATCTTACCAACCATGCTTG
LOC_Os02g39010
Os.11803.1.A1_at--1141--2631Chr02:23562588..23562612 (25 bp)
AACCATGCTTGGTTCTACCAGTATC
LOC_Os02g39010
Os.11803.1.A1_at--892--371Chr02:23562610..23562634 (25 bp)
ATCAACACTCTATTCTTCTTGTCGT
LOC_Os02g39010
Os.11803.1.A1_at--503--3651Chr02:23562624..23562648 (25 bp)
CTTCTTGTCGTGTCATGGATCTGCA
LOC_Os02g39010
Os.11803.1.A1_at--529--6411Chr02:23562641..23562665 (25 bp)
GATCTGCACTGCATCTTTTCTAATG
LOC_Os02g39010
Os.11803.1.A1_at--87--771Chr02:23562786..23562810 (25 bp)
ATGTCTGACCATTTTGTAGGAGCGG
LOC_Os02g39010
Os.11803.1.A1_at--1127--10791Chr02:23562849..23562873 (25 bp)
TTGTTTCCGGTGCTGCAATATGCTC
LOC_Os02g39010
Os.11803.1.A1_at--869--5191Chr02:23562863..23562887 (25 bp)
GCAATATGCTCAGGCGCGTTCCTTT
LOC_Os02g39010
Os.11803.1.A1_at--467--9371Chr02:23562999..23563023 (25 bp)
TCGTCGATTTGTTGGTTTGAACCGT
LOC_Os02g39010
Os.11803.1.A1_at--854--471Chr02:23563039..23563063 (25 bp)
ATCTGTACACTATCATGCTGCATCA
LOC_Os02g39010
Target Sequence 
GAAACGTATCCATGACAGTCACACTCACANCACTTTACTCCATTTCCTTAATACAAAGAACAATCTTACCAACCATGCTT
GGTTCTACCAGTATCAACACTCTATTCTTCTTGTCGTGTCATGGATCTGCACTGCATCTTTTCTAATGTCTTTGCATTTA
CTTGTTTTAACTGTCCCTTTGTTTGTGTCCCCTGCAAACCTCGTGCAAAGCGACAATGGGCCATACTCCGAGTTGCAGAG
GCAACAAGTTCTCTACGTCTCCTATCGTATGTCTGACCATTTTGTAGGAGCGGAGTTCAGGGACCTTTGTCAAGGCAGGC
GGCCGGATTTCTTGTTTCCGGTGCTGCAATATGCTCAGGCGCGTTCCTTTTTTCTTTTTTTTTTGGAGAACTTAGCCACT
AGGTAAAGGTTGTAAAATGCCGTAGCATCTGTTCTCTGTAAATACGACTGGGTGAATACAGTGAATTGGTATGTTTCNCT
TTCGTCGATTTGTTGGTTTGAACCGTGTCTGAAGTTCNCAAATCTGTACACTATCATGCTGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11803.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis