Browse Element(s) Details


Os.21789.2.S1_x_at

Description gb:AK065609.1
DB_XREF= gi:32975627
TID=Os.21789.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033D17, full insert sequence.
FL= gb:AK065609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3903010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_s_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39060OsAffx.2912.1.S1_at11/112+23576093..23577953RNA recognition motif family protein, expressed
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21789.2.S1_x_at--319--2411NONE
AAACAAGGCACAGATTTCGAAGAGC
NONE
Os.21789.2.S1_x_at--1055--911Chr02:23569274..23569298 (25 bp)
AGGCTCACTATGATGAATTCCGCAA
LOC_Os02g39030
Os.21789.2.S1_x_at--128--5451Chr02:23569322..23569346 (25 bp)
GAACGCCGTCACAAGAGGGTGATGA
LOC_Os02g39030
Os.21789.2.S1_x_at--39--8871Chr02:23569341..23569365 (25 bp)
TGATGAATGATGACTCTGGCACCGT
LOC_Os02g39030
Os.21789.2.S1_x_at--605--9351Chr02:23569365..23569389 (25 bp)
TCGCACAACTCGGAAGCATATGATC
LOC_Os02g39030
Os.21789.2.S1_x_at--365--6451Chr02:23569386..23569410 (25 bp)
GATCAGCGAATCCTCGGCATGTTAA
LOC_Os02g39030
Os.21789.2.S1_x_at--1045--11Chr02:23569413..23569437 (25 bp)
ATTGGCAGTGGCAGGAATGTTTTAC
LOC_Os02g39030
Os.21789.2.S1_x_at--37--5271Chr02:23569427..23569451 (25 bp)
GAATGTTTTACAGATATCCTACTAA
LOC_Os02g39030
Os.21789.2.S1_x_at--121--8691Chr02:23569467..23569491 (25 bp)
TGTGACTATCTGTTCTCTTGCTTAA
LOC_Os02g39030
Os.21789.2.S1_x_at--657--2271Chr02:23569554..23569578 (25 bp)
AAATCTGTATCGATCTTGTACTCAA
LOC_Os02g39030
Os.21789.2.S1_x_at--991--9691Chr02:23569575..23569599 (25 bp)
TCAAAACTTATGCTCTTGTTCATGC
LOC_Os02g39030
Target Sequence 
AAACAAGGCACAGATTTCGAAGAGCAACGGAAGGCTCACTATGATGAATTCCGCAAGATGAAGGAACTGCGTCGGAGGGG
AACGCCGTCACAAGAGGGTGATGAATGATGACTCTGGCACCGTCGCACAACTCGGAAGCATATGATCAGCGAATCCTCGG
CATGTTAAATATTGGCAGTGGCAGGAATGTTTTACAGATATCCTACTAAACCTTAAAAAGCTCATGTGACTATCTGTTCT
CTTGCTTAATTATTAGTACTGGTCCTAGGNCAGTACCAGGTAAAATTTTGGCTCTTATTATGGAGGTAAGAAAATCTGTA
TCGATCTTGTACTCAAAACTTATGCTCTTGTTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21789.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis