Browse Element(s) Details


OsAffx.24642.1.S1_at

Description tigr:9630.m03752
TID=OsAffx.24642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4278011/11hAT family dimerisation domain containing protein
LOC_Os02g3902011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42740NANA11+25240164..25240661hypothetical protein
LOC_Os11g42750NANA11+25244861..25246237retrotransposon protein, putative, unclassified
LOC_Os11g42760OsAffx.7390.1.S1_at11/1111+25249943..25250884hypothetical protein
LOC_Os11g42770OsAffx.19340.1.S1_at1/1111+25257566..25261860NB-ARC domain containing protein
LOC_Os11g42780OsAffx.24642.1.S1_at11/1111+25263638..25265740hAT family dimerisation domain containing protein
LOC_Os11g42790Os.14813.1.S1_at11/1111+25267127..25271203sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os11g42800Os.53158.1.S1_at11/1111+25274455..25277165Kinesin motor domain containing protein, expressed
LOC_Os11g42810OsAffx.19342.1.S1_at11/1111+25284795..25288147hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24642.1.S1_at--47--9792Chr11:25265248..25265272 (25 bp)
TAAGTTTCAGGGACTTCGCCTACAA
LOC_Os11g42780
OsAffx.24642.1.S1_at--1073--3253Chr11:25265280..25265304 (25 bp)
CAACTGTCTCTGTCGCTGGTAAGAA
LOC_Os11g42780
OsAffx.24642.1.S1_at--827--2932Chr11:25265391..25265415 (25 bp)
AAGGCACCCAAGAATTGTCCTCCTA
LOC_Os11g42780
OsAffx.24642.1.S1_at--726--7252Chr11:25265407..25265431 (25 bp)
GTCCTCCTACTTAGACAGTGACTGT
LOC_Os11g42780
OsAffx.24642.1.S1_at--781--5352Chr11:25265441..25265465 (25 bp)
GAAGATCTCAACGTCCTTGGATGGT
LOC_Os11g42780
OsAffx.24642.1.S1_at--434--712Chr11:25265469..25265493 (25 bp)
ATGATCACAAGACCCAATATCCCGT
LOC_Os11g42780
OsAffx.24642.1.S1_at--1006--3092Chr11:25265484..25265508 (25 bp)
AATATCCCGTGCTCTCAAAACTAGC
LOC_Os11g42780
OsAffx.24642.1.S1_at--456--6792Chr11:25265531..25265555 (25 bp)
GTTTCTACCGTATCCTCTGAATCGG
LOC_Os11g42780
OsAffx.24642.1.S1_at--136--5252Chr11:25265549..25265573 (25 bp)
GAATCGGCCTTCAGTACATGCGGAA
LOC_Os11g42780
OsAffx.24642.1.S1_at--158--5592Chr11:25265618..25265642 (25 bp)
GAAATGCTGCTCATCGTCAAAGACT
LOC_Os11g42780
OsAffx.24642.1.S1_at--735--3892Chr11:25265641..25265665 (25 bp)
CTGGGAGCTAGCTGCTGAACGTGCT
LOC_Os11g42780
Target Sequence 
TAAGTTTCAGGGACTTCGCCTACAAAGACCCCCAACTGTCTCTGTCGCTGGTAAGAAGAAAATACAATGGGGACGGATTT
GGGGTGGTAGTTCCTCTTCCACTCCTGCTGGGAGTTCCGCTTCAGGAACAACTGGTACTTTTCAAGGCACCCAAGAATTG
TCCTCCTACTTAGACAGTGACTGTACCAGCACTGAAGATCTCAACGTCCTTGGATGGTGGAATGATCACAAGACCCAATA
TCCCGTGCTCTCAAAACTAGCACGGGATGTGTTCACGGTGCCCGTTTCTACCGTATCCTCTGAATCGGCCTTCAGTACAT
GCGGAAGAATTATTGAGGACCGACGAAGAAATCTAAGCAGCGATATGGTGGAAATGCTGCTCATCGTCAAAGACTGGGAG
CTAGCTGCTGAACGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis