Browse Element(s) Details


OsAffx.7390.1.S1_at

Description tigr:9639.m03946
TID=OsAffx.7390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4276011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42710NANA11+25222702..25228060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g42720OsAffx.19340.2.S1_at3/1111+25230969..25235648retrotransposon protein, putative, unclassified
LOC_Os11g42730OsAffx.31445.1.S1_at2/1111+25236454..25236801lipase class 3 family protein, putative
LOC_Os11g42730OsAffx.31445.1.S1_x_at2/1111+25236454..25236801lipase class 3 family protein, putative
LOC_Os11g42740NANA11+25240164..25240661hypothetical protein
LOC_Os11g42750NANA11+25244861..25246237retrotransposon protein, putative, unclassified
LOC_Os11g42760OsAffx.7390.1.S1_at11/1111+25249943..25250884hypothetical protein
LOC_Os11g42770OsAffx.19340.1.S1_at1/1111+25257566..25261860NB-ARC domain containing protein
LOC_Os11g42780OsAffx.24642.1.S1_at11/1111+25263638..25265740hAT family dimerisation domain containing protein
LOC_Os11g42790Os.14813.1.S1_at11/1111+25267127..25271203sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os11g42800Os.53158.1.S1_at11/1111+25274455..25277165Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7390.1.S1_at--865--3271Chr11:25249977..25250001 (25 bp)
CAAAAACGGGCGACAGCGCGGATGT
LOC_Os11g42760
OsAffx.7390.1.S1_at--310--7811Chr11:25250015..25250039 (25 bp)
GGTCGGTGGATCAAGCAGCCGAAAT
LOC_Os11g42760
OsAffx.7390.1.S1_at--482--3231Chr11:25250026..25250050 (25 bp)
CAAGCAGCCGAAATTGAACGTGGGA
LOC_Os11g42760
OsAffx.7390.1.S1_at--1150--4691Chr11:25250111..25250135 (25 bp)
GCGGCGTCAGCAGCTTTGTGTCCAC
LOC_Os11g42760
OsAffx.7390.1.S1_at--45--1571Chr11:25250122..25250146 (25 bp)
AGCTTTGTGTCCACGGCGCAAGAAG
LOC_Os11g42760
OsAffx.7390.1.S1_at--940--2732Chr11:25250141..25250165 (25 bp)
AAGAAGCCAAGCGACGACAGGGAAA
LOC_Os11g42760
OsAffx.7390.1.S1_at--891--2111Chr11:25250157..25250181 (25 bp)
ACAGGGAAAGGGTGCTCCGCTGGAA
LOC_Os11g42760
OsAffx.7390.1.S1_at--89--1011Chr11:25250708..25250732 (25 bp)
AGGATTGACATCTTGGAGTTGGAAC
LOC_Os11g42760
OsAffx.7390.1.S1_at--1129--8531Chr11:25250721..25250745 (25 bp)
TGGAGTTGGAACGAATATCTGGGAA
LOC_Os11g42760
OsAffx.7390.1.S1_at--231--7891Chr11:25250788..25250812 (25 bp)
GGTTCAATGGTGGAGCAATATTCGA
LOC_Os11g42760
OsAffx.7390.1.S1_at--336--7951Chr11:25250816..25250840 (25 bp)
GGATCAAATATTCGGATAGGTTTCA
LOC_Os11g42760
Target Sequence 
CAAAAACGGGCGACAGCGCGGATGTGAGGGACGGTGGGGGTCGGTGGATCAAGCAGCCGAAATTGAACGTGGGAGGCGGG
AGGAGTAGCGCGGCAAGCTGGCGCTTGGTCAAGGTGGGGCGCTGGGTGGCAAAGGCGGCGTCAGCAGCTTTGTGTCCACG
GCGCAAGAAGCCAAGCGACGACAGGGAAAGGGTGCTCCGCTGGAAGAAGAACAAGGAAAAAGGAGGAATAGGGAGGATTG
ACATCTTGGAGTTGGAACGAATATCTGGGAAGGGATTCAAAGGGGAGATGAAAAAGGGGACCTTGGGAAGGTGGGTTCAA
TGGTGGAGCAATATTCGAATTGGATCAAATATTCGGATAGGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis