Browse Element(s) Details


Os.53158.1.S1_at

Description gb:AK071093.1
DB_XREF= gi:32981116
TID=Os.53158.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080D22, full insert sequence.
FL= gb:AK071093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4280011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42760OsAffx.7390.1.S1_at11/1111+25249943..25250884hypothetical protein
LOC_Os11g42770OsAffx.19340.1.S1_at1/1111+25257566..25261860NB-ARC domain containing protein
LOC_Os11g42780OsAffx.24642.1.S1_at11/1111+25263638..25265740hAT family dimerisation domain containing protein
LOC_Os11g42790Os.14813.1.S1_at11/1111+25267127..25271203sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os11g42800Os.53158.1.S1_at11/1111+25274455..25277165Kinesin motor domain containing protein, expressed
LOC_Os11g42810OsAffx.19342.1.S1_at11/1111+25284795..25288147hypothetical protein
LOC_Os11g42820NANA11+25291315..25291840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42830NANA11+25293541..25295784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42840OsAffx.31447.1.S1_at10/1111+25298367..25303229hypothetical protein
LOC_Os11g42840Os.51348.1.S1_x_at1/1111+25298367..25303229hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53158.1.S1_at--490--2491Chr11:25275031..25275055 (25 bp)
AACAGGTATCCTGCAGCTGAGCTCA
LOC_Os11g42800
Os.53158.1.S1_at--505--8091Chr11:25275003..25275027 (25 bp)
GGAGCCATTCCTTCAGCTACTCAAG
LOC_Os11g42800
Os.53158.1.S1_at--1137--2931Chr11:25274962..25274986 (25 bp)
AAGGCTAGGTCAGTGGCATTCTCAT
LOC_Os11g42800
Os.53158.1.S1_at--828--3591Chr11:25274946..25274970 (25 bp)
CATTCTCATCTAGCATGCCCAAGAT
LOC_Os11g42800
Os.53158.1.S1_at--215--751Chr11:25274918..25274942 (25 bp)
ATGTTTGCCACTCAAGTCTGATCAG
LOC_Os11g42800
Os.53158.1.S1_at--50--2211Chr11:25274880..25274904 (25 bp)
ACAACAGCATCGATTCGACGGCGGC
LOC_Os11g42800
Os.53158.1.S1_at--755--6131Chr11:25274840..25274864 (25 bp)
GAGGGAGAGCTTCATTTCTAGACCA
LOC_Os11g42800
Os.53158.1.S1_at--378--1371Chr11:25274809..25274833 (25 bp)
AGAGCTCCCTTGCATCAACACAGGA
LOC_Os11g42800
Os.53158.1.S1_at--262--7711Chr11:25274673..25274697 (25 bp)
GGGTGCTTGATGGTTTGCTTGTTAC
LOC_Os11g42800
Os.53158.1.S1_at--546--8811Chr11:25274658..25274682 (25 bp)
TGCTTGTTACCGGAGTAGTTCTTAA
LOC_Os11g42800
Os.53158.1.S1_at--951--7031Chr11:25274628..25274652 (25 bp)
GTAACTAATTCAGGGCCTTCCTTCG
LOC_Os11g42800
Target Sequence 
AACAGGTATCCTGCAGCTGAGCTCAGTGGGAGCCATTCCTTCAGCTACTCAAGCTGCAAGAATGCAGCCAAGGCTAGGTC
AGTGGCATTCTCATCTAGCATGCCCAAGATGAAATGTTTGCCACTCAAGTCTGATCAGATCAACATGAGCAACAACAGCA
TCGATTCGACGGCGGCGTCAGCGCCTCGAAGGAGGGAGAGCTTCATTTCTAGACCAGCTCAGAGAGCTCCCTTGCATCAA
CACAGGAGAAGGATGTCTAGCCTGACATAATATTACAGAAATACTGATTGAACAGTTATGTTTTTAACACCCTGTTTAGT
GGTGATGAAATGTTTATGAAATATGTTTTTGGTTTTGTGGGTGCTTGATGGTTTGCTTGTTACCGGAGTAGTTCTTAACT
TCTGTAACTAATTCAGGGCCTTCCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis