Browse Element(s) Details


Os.14813.1.S1_at

Description gb:AK066444.1
DB_XREF= gi:32976462
TID=Os.14813.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066C13, full insert sequence.
FL= gb:AK066444.1 gb:AK072026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4279011/11sodium/hydrogen exchanger 3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42750NANA11+25244861..25246237retrotransposon protein, putative, unclassified
LOC_Os11g42760OsAffx.7390.1.S1_at11/1111+25249943..25250884hypothetical protein
LOC_Os11g42770OsAffx.19340.1.S1_at1/1111+25257566..25261860NB-ARC domain containing protein
LOC_Os11g42780OsAffx.24642.1.S1_at11/1111+25263638..25265740hAT family dimerisation domain containing protein
LOC_Os11g42790Os.14813.1.S1_at11/1111+25267127..25271203sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os11g42800Os.53158.1.S1_at11/1111+25274455..25277165Kinesin motor domain containing protein, expressed
LOC_Os11g42810OsAffx.19342.1.S1_at11/1111+25284795..25288147hypothetical protein
LOC_Os11g42820NANA11+25291315..25291840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42830NANA11+25293541..25295784retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0009651biological_processresponse to salt stress
GO:0048366biological_processleaf development
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0015081molecular_functionsodium ion transporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14813.1.S1_at--98--9711Chr11:25267680..25267704 (25 bp)
TCAACCGGGAATCGAGTGCGCTTTC
LOC_Os11g42790
Os.14813.1.S1_at--873--5251Chr11:25267672..25267696 (25 bp)
GAATCGAGTGCGCTTTCGGATCCAC
LOC_Os11g42790
Os.14813.1.S1_at--980--9211Chr11:25267625..25267649 (25 bp)
TCCACTGATCCTGAACGGTTCCGAT
LOC_Os11g42790
Os.14813.1.S1_at--579--2571Chr11:25267612..25267636 (25 bp)
AACGGTTCCGATGTCGATCCTGAGA
LOC_Os11g42790
Os.14813.1.S1_at--816--6371Chr11:25267597..25267621 (25 bp)
GATCCTGAGATTGGTGTGGGCATTC
LOC_Os11g42790
Os.14813.1.S1_at--755--7791Chr11:25267526..25267550 (25 bp)
GGTCCACCATTACTGGCGCAAGTTC
LOC_Os11g42790
Os.14813.1.S1_at--744--6111Chr11:25267427..25267451 (25 bp)
GAGTGTGCCATTACTCCAGGGAAAT
LOC_Os11g42790
Os.14813.1.S1_at--1069--5871Chr11:25267378..25267402 (25 bp)
GAGCGTGCCATTACTCCAGGGAAAT
LOC_Os11g42790
Os.14813.1.S1_at--730--1631Chr11:25267260..25267284 (25 bp)
AGCGTTCTTGGTAGCTGTGGTACAT
LOC_Os11g42790
Os.14813.1.S1_at--188--351Chr11:25267187..25267211 (25 bp)
ATAAAGCCTCTGTAGTTTAGCAAGA
LOC_Os11g42790
Os.14813.1.S1_at--1160--7772Chr11:25267159..25267183 (25 bp)
GGTGCTGAAAATTTTGCCACGATTT
LOC_Os11g42790
Target Sequence 
TCAACCGGGAATCGAGTGCGCTTTCGGATCCACCTAGCCCGAAATCCTTCCTTGATCCACTGATCCTGAACGGTTCCGAT
GTCGATCCTGAGATTGGTGTGGGCATTCGCCGACCGACAAGCCTCCGACTTCTCCTAGCAAGCCCGACACAGTCGGTCCA
CCATTACTGGCGCAAGTTCGACAACGCCNTTCATGAGGCCGGTGTTTGGGGGCCGAGGATTCGTCCCCTTCGTCCCCGGC
TCACCAACTGAAAGGAGTGTGCCATTACTCCAGGGAAATGAGAACTAGAAAACTTTTTCAAAGGAGCGTGCCATTACTCC
AGGGAAATGAGAGCTAGAAAACATAAACAAAGGTTGTGTAAATCTGAGGTAGAAGAACAATCAGCAAACACAGTTTCTGT
AAATTTATCTGAGGTAGTAACAGCGTTCTTGGTAGCTGTGGTACATGCTGATGTGTTATGTACCTAATATTGTAGATAGC
ATGGATGTATATATATAAAGCCTCTGTAGTTTAGCAAGAAATGGTGCTGAAAATTTTGCCACGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis