Browse Element(s) Details


OsAffx.19342.1.S1_at

Description tigr:9639.m03950
TID=OsAffx.19342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4281011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42770OsAffx.19340.1.S1_at1/1111+25257566..25261860NB-ARC domain containing protein
LOC_Os11g42780OsAffx.24642.1.S1_at11/1111+25263638..25265740hAT family dimerisation domain containing protein
LOC_Os11g42790Os.14813.1.S1_at11/1111+25267127..25271203sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os11g42800Os.53158.1.S1_at11/1111+25274455..25277165Kinesin motor domain containing protein, expressed
LOC_Os11g42810OsAffx.19342.1.S1_at11/1111+25284795..25288147hypothetical protein
LOC_Os11g42820NANA11+25291315..25291840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42830NANA11+25293541..25295784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42840OsAffx.31447.1.S1_at10/1111+25298367..25303229hypothetical protein
LOC_Os11g42840Os.51348.1.S1_x_at1/1111+25298367..25303229hypothetical protein
LOC_Os11g42850Os.53511.1.S1_at11/1111+25304928..25309114expressed protein
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19342.1.S1_at--730--10111Chr11:25285845..25285869 (25 bp)
TATGAGCATGCTACTTTAACCGCCC
LOC_Os11g42810
OsAffx.19342.1.S1_at--433--1331Chr11:25285792..25285816 (25 bp)
AGAGGATCCCTTCCGGCAGCAGAAT
LOC_Os11g42810
OsAffx.19342.1.S1_at--416--3951Chr11:25285779..25285803 (25 bp)
CGGCAGCAGAATTCATCGGTGGATG
LOC_Os11g42810
OsAffx.19342.1.S1_at--949--2531Chr11:25285745..25285769 (25 bp)
AACTACATCAACAGGCTCTGTCTCA
LOC_Os11g42810
OsAffx.19342.1.S1_at--63--8331Chr11:25285732..25285756 (25 bp)
GGCTCTGTCTCAGCAAAATTTGCAA
LOC_Os11g42810
OsAffx.19342.1.S1_at--296--5131Chr11:25285714..25285735 (22 bp)
GCAAATTCATCGACTTCCAAGGCAT
LOC_Os11g42810
OsAffx.19342.1.S1_at--965--5511Chr11:25285430..25285538 (25 bp)
GAAAACCTGACCTTGCGGGACATGA
LOC_Os11g42810
OsAffx.19342.1.S1_at--481--8131Chr11:25285413..25285437 (25 bp)
GGACATGAATATCGCCTTGAACTTC
LOC_Os11g42810
OsAffx.19342.1.S1_at--1090--6871Chr11:25285249..25285273 (25 bp)
GTATTATTTTTGCTGTCCACTGGAG
LOC_Os11g42810
OsAffx.19342.1.S1_at--1--6211Chr11:25284902..25285251 (25 bp)
GAGGCACCAGAGAACGGTCACTGTT
LOC_Os11g42810
OsAffx.19342.1.S1_at--806--8971Chr11:25284852..25284876 (25 bp)
TGAACTGAGGCATCCGGCTACAGGT
LOC_Os11g42810
Target Sequence 
TATGAGCATGCTACTTTAACCGCCCTAGCTCTTGAATGGGGCATGGAACCCCCAGAGGATCCCTTCCGGCAGCAGAATTC
ATCGGTGGATGATCAAGAAGAACTACATCAACAGGCTCTGTCTCAGCAAAATTTGCAAATTCATCGACTTCCAAGGCATG
AAGTTTCCTTGGAAGAAATTGCTGATAATGGGAAAAAATGGATGGGTGAGGAGGTGATGGTGGCTTTCAAAAATTATATT
GAAGGAAAACCTGACCTTGCGGGACATGAATATCGCCTTGAACTTCAACACCAGTGTTTCAATGTAGAGAACTATTACGA
AAATTTCCACCATTATAACTTTAATGTCAAGATGAAGAAGTATGATTCAGATGATTGGAACGAGACAATATATTTTGCTG
AAGTAAAGATGATATTCAGGAGGAAGTATTATTTTTGCTGTCCACTGGAGGCACCAGAGAACGGTCACTGTTATGCATGC
AGAAACCAAGGAATGGATGAACTGAGGCATCCGGCTACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis