Browse Element(s) Details


Os.53511.1.S1_at

Description gb:AK073033.1
DB_XREF= gi:32983056
TID=Os.53511.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145H07, full insert sequence.
FL= gb:AK073033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4285011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42810OsAffx.19342.1.S1_at11/1111+25284795..25288147hypothetical protein
LOC_Os11g42820NANA11+25291315..25291840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42830NANA11+25293541..25295784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42840OsAffx.31447.1.S1_at10/1111+25298367..25303229hypothetical protein
LOC_Os11g42840Os.51348.1.S1_x_at1/1111+25298367..25303229hypothetical protein
LOC_Os11g42850Os.53511.1.S1_at11/1111+25304928..25309114expressed protein
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein
LOC_Os11g42870OsAffx.31448.1.S1_at11/1111+25321520..25321986hypothetical protein
LOC_Os11g42880Os.21390.1.S1_at10/1111+25327951..25332150expressed protein
LOC_Os11g42890OsAffx.31449.1.S1_at11/1111+25333252..25337274hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53511.1.S1_at--251--6311Chr11:25305380..25305404 (25 bp)
GATGACCTGAAACATCCTGTGATAG
LOC_Os11g42850
Os.53511.1.S1_at--702--7351Chr11:25305340..25305364 (25 bp)
GTGACAACGATACAATGTTTCCCTA
LOC_Os11g42850
Os.53511.1.S1_at--645--6831Chr11:25305324..25305348 (25 bp)
GTTTCCCTATATGTACATCGGTGAT
LOC_Os11g42850
Os.53511.1.S1_at--34--5011Chr11:25305293..25305317 (25 bp)
GCATGTCCTTATTTCTGGTTGAGTG
LOC_Os11g42850
Os.53511.1.S1_at--970--2391Chr11:25305172..25305196 (25 bp)
AAACTTGTAACTTGTGACTCTATGT
LOC_Os11g42850
Os.53511.1.S1_at--1063--1191Chr11:25305066..25305090 (25 bp)
AGTATCTTTATGTTTCTCTCTGTTA
LOC_Os11g42850
Os.53511.1.S1_at--1039--6831Chr11:25305055..25305079 (25 bp)
GTTTCTCTCTGTTATTGATCGACAC
LOC_Os11g42850
Os.53511.1.S1_at--499--6391Chr11:25305039..25305063 (25 bp)
GATCGACACAAAGCTTCATGTTTAT
LOC_Os11g42850
Os.53511.1.S1_at--888--171Chr11:25304995..25305019 (25 bp)
ATTTATGTAATGTTTCTCGATCGGT
LOC_Os11g42850
Os.53511.1.S1_at--545--10591Chr11:25304982..25305006 (25 bp)
TTCTCGATCGGTTTGATCTGTATCA
LOC_Os11g42850
Os.53511.1.S1_at--450--3111Chr11:25304956..25304980 (25 bp)
AATTTACACGGTTACTTCCTATATG
LOC_Os11g42850
Target Sequence 
GATGACCTGAAACATCCTGTGATAGGTGCATTTGATAGAGGTGACAACGATACAATGTTTCCCTATATGTACATCGGTGA
TGATACAGCATGTCCTTATTTCTGGTTGAGTGAGTCTGATGATGAGTTTCCAAATAGAGTTTTGGATGATTCAGATGACG
ATGATATAATTTAGTGATTATTAGTTTTGATGAAATTAATGGGTCATAAAACTTGTAACTTGTGACTCTATGTTATGGTT
GTGAACAGGGTTAGATTCTAGTGCTCTTAAAGTATTATTTTATAATGCATTATGTAACACTGGATTGAATTTTTAGTATC
TTTATGTTTCTCTCTGTTATTGATCGACACAAAGCTTCATGTTTATTGTGGTTGTGGGTTGTCATATTTATGTAATGTTT
CTCGATCGGTTTGATCTGTATCAAAATTTACACGGTTACTTCCTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis