Browse Element(s) Details


OsAffx.31448.1.S1_at

Description tigr:9639.m03956
TID=OsAffx.31448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4287011/11hypothetical protein
LOC_Os03g457701/11S3 self-incompatibility locus-linked pollen 3.15 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42840OsAffx.31447.1.S1_at10/1111+25298367..25303229hypothetical protein
LOC_Os11g42840Os.51348.1.S1_x_at1/1111+25298367..25303229hypothetical protein
LOC_Os11g42850Os.53511.1.S1_at11/1111+25304928..25309114expressed protein
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein
LOC_Os11g42870OsAffx.31448.1.S1_at11/1111+25321520..25321986hypothetical protein
LOC_Os11g42880Os.21390.1.S1_at10/1111+25327951..25332150expressed protein
LOC_Os11g42890OsAffx.31449.1.S1_at11/1111+25333252..25337274hypothetical protein
LOC_Os11g42900OsAffx.23514.3.S1_at11/1111+25339318..25345715hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31448.1.S1_at--157--7271Chr11:25321932..25321956 (25 bp)
GTCCATTACTTGTATGCATGCAACT
LOC_Os11g42870
OsAffx.31448.1.S1_at--599--3592Chr11:25321929..25321953 (25 bp)
CATTACTTGTATGCATGCAACTACA
LOC_Os11g42870
OsAffx.31448.1.S1_at--143--6911Chr11:25321921..25321945 (25 bp)
GTATGCATGCAACTACAATTCCAGG
LOC_Os11g42870
OsAffx.31448.1.S1_at--298--651Chr11:25321919..25321943 (25 bp)
ATGCATGCAACTACAATTCCAGGGT
LOC_Os11g42870
OsAffx.31448.1.S1_at--722--9051Chr11:25321918..25321942 (25 bp)
TGCATGCAACTACAATTCCAGGGTT
LOC_Os11g42870
OsAffx.31448.1.S1_at--423--4991Chr11:25321917..25321941 (25 bp)
GCATGCAACTACAATTCCAGGGTTA
LOC_Os11g42870
OsAffx.31448.1.S1_at--279--6771Chr11:25321896..25321920 (25 bp)
GTTAAGAACCCTTACTTCTCCAGAG
LOC_Os11g42870
OsAffx.31448.1.S1_at--280--10491Chr11:25321895..25321919 (25 bp)
TTAAGAACCCTTACTTCTCCAGAGT
LOC_Os11g42870
OsAffx.31448.1.S1_at--984--9731Chr11:25321894..25321918 (25 bp)
TAAGAACCCTTACTTCTCCAGAGTT
LOC_Os11g42870
OsAffx.31448.1.S1_at--348--1431Chr11:25321892..25321916 (25 bp)
AGAACCCTTACTTCTCCAGAGTTCA
LOC_Os11g42870
OsAffx.31448.1.S1_at--1049--2591Chr11:25321890..25321914 (25 bp)
AACCCTTACTTCTCCAGAGTTCAGA
LOC_Os11g42870
Target Sequence 
GTCCATTACTTGTATGCATGCAACTACAATTCCAGGGTTAAGAACCCTTACTTCTCCAGAGTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis