Browse Element(s) Details


OsAffx.23514.3.S1_at

Description tigr:9639.m03960
TID=OsAffx.23514.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MSG15.19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4290011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein
LOC_Os11g42870OsAffx.31448.1.S1_at11/1111+25321520..25321986hypothetical protein
LOC_Os11g42880Os.21390.1.S1_at10/1111+25327951..25332150expressed protein
LOC_Os11g42890OsAffx.31449.1.S1_at11/1111+25333252..25337274hypothetical protein
LOC_Os11g42900OsAffx.23514.3.S1_at11/1111+25339318..25345715hypothetical protein
LOC_Os11g42910OsAffx.23514.1.S1_at10/1111+25357604..25364961hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23514.3.S1_at--317--8151Chr11:25341837..25341861 (25 bp)
GGACAAAGATATACCCACTGCCTCT
LOC_Os11g42900
OsAffx.23514.3.S1_at--387--1991Chr11:25341821..25341845 (25 bp)
ACTGCCTCTGCACTTCCAAAGAAGG
LOC_Os11g42900
OsAffx.23514.3.S1_at--1038--4971Chr11:25341018..25341042 (25 bp)
GCATCGAGTGGAAACTGCCCTGAAA
LOC_Os11g42900
OsAffx.23514.3.S1_at--161--7371Chr11:25340969..25340989 (21 bp)
GTGACAAAGTTGACCCTGAGGGCTT
LOC_Os11g42900
OsAffx.23514.3.S1_at--516--6131Chr11:25340314..25340337 (24 bp)
GAGGGCTTAACGGTCGTCAGATCAT
LOC_Os11g42900
OsAffx.23514.3.S1_at--207--1491Chr11:25339688..25339712 (25 bp)
AGCAAGCTTTTGCAGGACCGACTCT
LOC_Os11g42900
OsAffx.23514.3.S1_at--31--5711Chr11:25339669..25339693 (25 bp)
GACTCTTCAAACTCGCATCATATGA
LOC_Os11g42900
OsAffx.23514.3.S1_at--1143--6011Chr11:25339513..25339537 (25 bp)
GAGAGTGCCATACATCCATGCCAAG
LOC_Os11g42900
OsAffx.23514.3.S1_at--256--6851Chr11:25339476..25339500 (25 bp)
GTTTCCCATGCCGTTATGGTTATTG
LOC_Os11g42900
OsAffx.23514.3.S1_at--567--8431Chr11:25339426..25339450 (25 bp)
GGCCTCTGCTGCAAATGACCGTGAG
LOC_Os11g42900
OsAffx.23514.3.S1_at--202--5831Chr11:25339410..25339434 (25 bp)
GACCGTGAGCATGTTATGATCCAGA
LOC_Os11g42900
Target Sequence 
GGACAAAGATATACCCACTGCCTCTGCACTTCCAAAGAAGGATTTCACATGGAGTTTGTCACTGAATGACCTAAAGACTC
GGTACGAGAATACAGTTGCTGAAGAGTTTGCATCTGAGGAGTGCAAGAAAAGGGGCACGCATCGAGTGGAAACTGCCCTG
AAAATTCTAAAAGATGATGGTGTCATAGGCCGTGACAAAGTTGACCCTGAGGGCTTAACGGTCGTCAGATCATTAGCATT
TGCTGATCTTCAGTTTCAGCAGGGGCACATGGTCAAGAGGTGGAGCAAGCTTTTGCAGGACCGACTCTTCAAACTCGCAT
CATATGAGAAGGTTGGCATCAATGAACCACAAAAGCCGGGAGAGATCTACAGCTATGATAAGAGAGTGCCATACATCCAT
GCCAAGTCCAATCTGCCGGTTTCCCATGCCGTTATGGTTATTGGTGATGGACGACATCGAGAGCCAATGGCCTCTGCTGC
AAATGACCGTGAGCATGTTATGATCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23514.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis