Browse Element(s) Details


OsAffx.23514.1.S1_at

Description tigr:9639.m03961
TID=OsAffx.23514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4291010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42890OsAffx.31449.1.S1_at11/1111+25333252..25337274hypothetical protein
LOC_Os11g42900OsAffx.23514.3.S1_at11/1111+25339318..25345715hypothetical protein
LOC_Os11g42910OsAffx.23514.1.S1_at10/1111+25357604..25364961hypothetical protein
LOC_Os11g42920OsAffx.31450.1.S1_at10/1111+25372577..25374817hypothetical protein
LOC_Os11g42930Os.23136.1.A1_s_at11/1111+25376506..25380914expressed protein
LOC_Os11g42940NANA11+25385447..25386050plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os11g42950OsAffx.31451.1.S1_at11/1111+25389242..25389915expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23514.1.S1_at--383--2271Chr11:25363526..25363550 (25 bp)
AAAGAACCTGGTGTCCTGGGCAGTA
LOC_Os11g42910
OsAffx.23514.1.S1_at--574--2631NONE
AACCTGAGTGTTTGCGCTTTGGTCA
NONE
OsAffx.23514.1.S1_at--775--1151Chr11:25364451..25364475 (25 bp)
AGTACCTCTTCGATACAGTTTTCAG
LOC_Os11g42910
OsAffx.23514.1.S1_at--537--1211Chr11:25364467..25364491 (25 bp)
AGTTTTCAGTATGATCAGTCCCATC
LOC_Os11g42910
OsAffx.23514.1.S1_at--999--3651Chr11:25364491..25364515 (25 bp)
CTTACTGCACTTCTTGTCCATATAG
LOC_Os11g42910
OsAffx.23514.1.S1_at--1003--531Chr11:25364533..25364557 (25 bp)
AGGGTTGTAATTCTTAGGCCTGACA
LOC_Os11g42910
OsAffx.23514.1.S1_at--598--10511Chr11:25364590..25364614 (25 bp)
TTCAAAATCAAATCCCACTCTCAAC
LOC_Os11g42910
OsAffx.23514.1.S1_at--441--2431Chr11:25364641..25364665 (25 bp)
AAAACCGTCTTTGATACTGTCAAGG
LOC_Os11g42910
OsAffx.23514.1.S1_at--628--6051Chr11:25364728..25364752 (25 bp)
GAGATTTACCACTACGACCGACAGA
LOC_Os11g42910
OsAffx.23514.1.S1_at--1021--3711Chr11:25364757..25364781 (25 bp)
CTACCTTAATCCTGTGTCTTCTTTA
LOC_Os11g42910
OsAffx.23514.1.S1_at--741--7451Chr11:25364770..25364794 (25 bp)
GTGTCTTCTTTACAGGCTTCTCATG
LOC_Os11g42910
Target Sequence
AAAGAACCTGGTGTCCTGGGCAGTAGAAAGCAACAACCTGAGTGTTTGCGCTTTGGTCAAGGACTTGAGGTTGTAGTACC
TCTTCGATACAGTTTTCAGTATGATCAGTCCCATCTTACTGCACTTCTTGTCCATATAGATAGATATAGAATCAGTAGGG
TTGTAATTCTTAGGCCTGACAATATTGTTCATGATTTGCAGGTTGTAAGTAATTTCAAAATCAAATCCCACTCTCAACTT
CCCATCAAGGAGGACCAAGAGATAAAAACCGTCTTTGATACTGTCAAGGATGGAAAAATTCTAGTGGGACATTTTCACAT
GTCGGAAAACTTCTTCTCCTTGAGACCAGGGGAGATTTACCACTACGACCGACAGAAGCCCTACCTTAATCCTGTGTCTT
CTTTACAGGCTTCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis