Browse Element(s) Details


OsAffx.31450.1.S1_at

Description tigr:9639.m03962
TID=OsAffx.31450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4292010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42910OsAffx.23514.1.S1_at10/1111+25357604..25364961hypothetical protein
LOC_Os11g42920OsAffx.31450.1.S1_at10/1111+25372577..25374817hypothetical protein
LOC_Os11g42930Os.23136.1.A1_s_at11/1111+25376506..25380914expressed protein
LOC_Os11g42940NANA11+25385447..25386050plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os11g42950OsAffx.31451.1.S1_at11/1111+25389242..25389915expressed protein
LOC_Os11g42960Os.12421.1.S1_at11/1111+25392491..25393757plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os11g42970Os.50971.1.S1_at11/1111+25394661..25395944plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31450.1.S1_at--173--4331Chr11:25374759..25374783 (25 bp)
CCATTTATGGGTTGAGTCAAAGAGA
LOC_Os11g42920
OsAffx.31450.1.S1_at--1030--5091NONE
GCAAAGGGAGTTGACTCCCTCTCTT
NONE
OsAffx.31450.1.S1_at--1039--1051Chr11:25372998..25373018 (21 bp)
AGGGAGTTGACTCCCTCTCTTTCCT
LOC_Os11g42920
OsAffx.31450.1.S1_at--874--3651Chr11:25372980..25373004 (25 bp)
CTTTCCTCTTGGCACGGCCGAGGAG
LOC_Os11g42920
OsAffx.31450.1.S1_at--655--4091Chr11:25372843..25372867 (25 bp)
CGACGAGTGGGCAACGACGAAATGG
LOC_Os11g42920
OsAffx.31450.1.S1_at--761--571Chr11:25372806..25372830 (25 bp)
ATGCCGACCCCGATGACAACAACGA
LOC_Os11g42920
OsAffx.31450.1.S1_at--608--4071Chr11:25372802..25372826 (25 bp)
CGACCCCGATGACAACAACGAGTGG
LOC_Os11g42920
OsAffx.31450.1.S1_at--114--5631Chr11:25372792..25372816 (25 bp)
GACAACAACGAGTGGGCGAATCTAG
LOC_Os11g42920
OsAffx.31450.1.S1_at--273--6371Chr11:25372743..25372767 (25 bp)
GATCCGGCAGCAATGGGCCTCGGCC
LOC_Os11g42920
OsAffx.31450.1.S1_at--63--7231Chr11:25372660..25372684 (25 bp)
GTCCCGCCCGGATATGGAGCCAAGA
LOC_Os11g42920
OsAffx.31450.1.S1_at--408--4211Chr11:25372657..25372681 (25 bp)
CCGCCCGGATATGGAGCCAAGAGCG
LOC_Os11g42920
Target Sequence 
CCATTTATGGGTTGAGTCAAAGAGAAGAAAGTCAAGCAAAGGGAGTTGACTCCCTCTCTTTCCTCTTGGCACGGCCGAGG
AGGAGGCGCCAGGCGCCGGGAGCGGGCGGCGGGTGGCACCGAGCAGCGGGCGGCGTGGCCGAGGAGGAGGCGCCGGGAGT
GGGCGGCGGGCGGCACGGCCGATCCCGACGACGACGACGAGTGGGCAACGACGAAATGGGTGGTGGCGGCGATGCCGACC
CCGATGACAACAACGAGTGGGCGAATCTAGAGGCGGCGGGCCTCGTCCTGCCCGGATCCGGCAGCAATGGGCCTCGGCCC
ACCCGGATCCGGCAGCGGCGGGCCTCGTCCCGCCCAGATCCAGCAGCAGCGGGCCTCGTCCCGCCCGGATATGGAGCCAA
GAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis