Browse Element(s) Details


Os.12421.1.S1_at

Description gb:AK060103.1
DB_XREF= gi:32970121
TID=Os.12421.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A09, full insert sequence.
FL= gb:AK060103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4296011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42920OsAffx.31450.1.S1_at10/1111+25372577..25374817hypothetical protein
LOC_Os11g42930Os.23136.1.A1_s_at11/1111+25376506..25380914expressed protein
LOC_Os11g42940NANA11+25385447..25386050plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os11g42950OsAffx.31451.1.S1_at11/1111+25389242..25389915expressed protein
LOC_Os11g42960Os.12421.1.S1_at11/1111+25392491..25393757plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os11g42970Os.50971.1.S1_at11/1111+25394661..25395944plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os11g42980Os.45976.1.S1_x_at2/1111+25403821..25407547transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g42989NANA11+25410222..25411961Exo70 exocyst complex subunit family protein
LOC_Os11g43000NANA11+25414192..25414767hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12421.1.S1_at--779--8231Chr11:25393065..25393089 (25 bp)
GGCAACTTCTGCAACCAGGTGCACA
LOC_Os11g42960
Os.12421.1.S1_at--226--3471Chr11:25393050..25393074 (25 bp)
CAGGTGCACATTGCCATGTACGTCT
LOC_Os11g42960
Os.12421.1.S1_at--894--3491Chr11:25392894..25392918 (25 bp)
CATGGCTGCCATAGCAAGCATTAGT
LOC_Os11g42960
Os.12421.1.S1_at--821--2711Chr11:25392879..25392903 (25 bp)
AAGCATTAGTCGAGCTCTCTAGCTA
LOC_Os11g42960
Os.12421.1.S1_at--541--5911Chr11:25392868..25392892 (25 bp)
GAGCTCTCTAGCTAGGGTACATTTA
LOC_Os11g42960
Os.12421.1.S1_at--704--9411Chr11:25392799..25392823 (25 bp)
TCGTCGCTTGATTAATTTTCCATAT
LOC_Os11g42960
Os.12421.1.S1_at--446--7071Chr11:25392704..25392728 (25 bp)
GTAATATAATCAAGTGGCCTAGCTA
LOC_Os11g42960
Os.12421.1.S1_at--275--7551Chr11:25392691..25392715 (25 bp)
GTGGCCTAGCTATATTTGTATCATG
LOC_Os11g42960
Os.12421.1.S1_at--741--7471Chr11:25392638..25392662 (25 bp)
GTGTGTGTCACTGTGTTTTATTTTG
LOC_Os11g42960
Os.12421.1.S1_at--985--6811Chr11:25392609..25392633 (25 bp)
GTTTTTGCTTGATTAATTACCATGC
LOC_Os11g42960
Os.12421.1.S1_at--1157--9611Chr11:25392579..25392603 (25 bp)
TCATGGATGCAGATCGACTTGCAAT
LOC_Os11g42960
Target Sequence 
GGCAACTTCTGCAACCAGGTGCACATTGCCATGTACGTCTCCCTCGCCGCCGGNGTCGCCCTGCTCGTCGCCGAGATCGT
CAAGCACTGGCCGGACTCCGGGAANNAAGNANNNNNNNNGCGGCGGCGGATGCGGGTCGGACTCCGACTCCGACAAGTCA
ACCCCTTGCCACCATGGCTGCCATAGCAAGCATTAGTCGAGCTCTCTAGCTAGGGTACATTTAATTCTATAATCGAGAAA
TTTATACGAGATTTTTAGATAAATTAATCGTCGCTTGATTAATTTTCCATATATTNTCAAACAAAAGAAAACCAAAAAAA
AAAAAACAAGCCATGCATGCATGCATTTNTCATGAGAGGCCAGTAATATAATCAAGTGGCCTAGCTATATTTGTATCATG
GAAAACTTGTTGTAATTAATTAATGTTTGTGTGTGTCACTGTGTTTTATTTTGTTTGGTTTTTGCTTGATTAATTACCAT
GCATGGATCATGGATGCAGATCGACTTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis