Browse Element(s) Details


OsAffx.14225.1.S1_x_at

Description tigr:9632.m03896
TID=OsAffx.14225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4096011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40960OsAffx.14225.1.S1_x_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40960OsAffx.14225.1.S1_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14225.1.S1_x_at--165--3351Chr04:24090966..24090990 (25 bp)
CACGGGACGCCGTGCGATGCAGCCT
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--430--9051Chr04:24090786..24090810 (25 bp)
TGCAGAGCATCCTGGCAGCGCACGA
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--544--9511Chr04:24090723..24090747 (25 bp)
TCTCGAGGGACAAGTCGGTCGGCAT
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--29--4531Chr04:24090666..24090690 (25 bp)
GCCGCAGGATCCACGACCTGTGGTT
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--1151--7951Chr04:24090660..24090684 (25 bp)
GGATCCACGACCTGTGGTTCACCGT
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--682--2651Chr04:24090625..24090649 (25 bp)
AAGCCGGAGCTTCTGTGCGCGGGCA
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--902--7571Chr04:24090605..24090629 (25 bp)
GGGCAGGGACGTCGCTAGGCAAGGG
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--172--9971Chr04:24090565..24090589 (25 bp)
TACCGCGACAAGTATCCCCGCGTGT
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--903--1191Chr04:24090555..24090579 (25 bp)
AGTATCCCCGCGTGTTCGCGGGCCT
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--388--1831Chr04:24090529..24090553 (25 bp)
ACGCGCCTGCACGTCGAGTGCGTTA
LOC_Os04g40960
OsAffx.14225.1.S1_x_at--943--1891Chr04:24090519..24090543 (25 bp)
ACGTCGAGTGCGTTAAGCTAGGCGC
LOC_Os04g40960
Target Sequence 
CACGGGACGCCGTGCGATGCAGCCTCCTCTCGAGGCGGTGGAGCCGCGTCCCCGGCATGCTCGCCAACATCGAGCTGGAC
GTCGACTCCTTCGCACCCGACCCCGACGACGACCCCGACGACGGCTTCACATCCACCCTATCCGAGTCCGCGAGGAGCAA
CCACGCGATGGTGCGCGCGGTGCAGAGCATCCTGGCAGCGCACGAGAGCCGGCACGCCATCCGCCGCCTGGGCCTGAGCT
TCTTCTCGAGGGACAAGTCGGTCGGCATCGTCCGCGCGGTCGACGACGCCATGGCCCGCGGCCGCAGGATCCACGACCTG
TGGTTCACCGTCTCGTCGGAGAAGCCGGAGCTTCTGTGCGCGGGCAGGGACGTCGCTAGGCAAGGGGCGCGCCTCGCGTC
CTACCGCGACAAGTATCCCCGCGTGTTCGCGGGCCTCACGCGCCTGCACGTCGAGTGCGTTAAGCTAGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14225.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis