Browse Element(s) Details


Os.6028.1.S1_at

Description gb:AK111976.1
DB_XREF= gi:37988639
TID=Os.6028.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B02, full insert sequence.
FL= gb:AK111976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4094010/11Mitotic spindle checkpoint protein MAD2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40900Os.27605.1.S1_at5/114+24057495..24059304expressed protein
LOC_Os04g40910Os.22667.1.S1_at11/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910Os.52534.1.S1_x_at5/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910OsAffx.16986.1.S1_at4/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40920Os.51645.1.S1_at11/114+24074963..24076626expressed protein
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40960OsAffx.14225.1.S1_x_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40960OsAffx.14225.1.S1_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007094biological_processmitotic spindle checkpoint
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6028.1.S1_at--847--9611Chr04:24083100..24083124 (25 bp)
TCATGAGGGAGATCCAGGCCATCAT
LOC_Os04g40940
Os.6028.1.S1_at--198--9131Chr04:24082884..24082908 (25 bp)
TGCTGGCGTACACCGACATGGACGT
LOC_Os04g40940
Os.6028.1.S1_at--1153--9051Chr04:24082799..24082818 (20 bp)
TGCATTCCTTCGACACCAAGATTCA
LOC_Os04g40940
Os.6028.1.S1_at--281--4211Chr04:24082591..24082615 (25 bp)
CCCCTTGCTAGTTTATTGCTGCTAG
LOC_Os04g40940
Os.6028.1.S1_at--831--4891Chr04:24082554..24082578 (25 bp)
GCTTAGCTTGCTAGGCGTGATGCTT
LOC_Os04g40940
Os.6028.1.S1_at--869--6331Chr04:24082536..24082560 (25 bp)
GATGCTTGTGTGAATCGTTCGTTCA
LOC_Os04g40940
Os.6028.1.S1_at--1027--3691Chr04:24082497..24082521 (25 bp)
CTATCGGAACTCGTGTGCTCTGGGA
LOC_Os04g40940
Os.6028.1.S1_at--299--10331Chr04:24082464..24082488 (25 bp)
TTTCTTGTTCTTTACCGCATTTTGG
LOC_Os04g40940
Os.6028.1.S1_at--1058--5251Chr04:24082437..24082461 (25 bp)
GAATCGACTGTGTATCGCTGCTTCA
LOC_Os04g40940
Os.6028.1.S1_at--377--9011Chr04:24082356..24082380 (25 bp)
TGAATGCATCGTGATCGTGTGCCAC
LOC_Os04g40940
Os.6028.1.S1_at--507--3991Chr04:24082341..24082365 (25 bp)
CGTGTGCCACGATTTCTTCACTGTG
NONE
Target Sequence 
TCATGAGGGAGATCCAGGCCATCATGCNCCAGGTCGCCTCCTGCATNACNTACCTCCCCTGCCTNNACGANCCATGCATA
TTCGANGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAN
TCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATTCACAAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGT
GGGACGAGGAGTAGAAGCCGCCGGTNGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTA
TTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTG
TGCTCTGGGAGAATNNNCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGAT
TTTTTTTTCCTCAGCCTTTGAANTCCTGGGTNGAAAGNACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTC
TTCACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis