Browse Element(s) Details


Os.26687.1.S1_at

Description gb:CB651466
DB_XREF= gi:29646459
DB_XREF=OSJNEb16G23.r
CLONE=OSJNEb16G23
TID=Os.26687.1
CNT=46
FEA=EST
TIER=Stack
STK=14
UG=Os.26687 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T48413 (A.thaliana) T48413 malate synthase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4099011/11Malate synthase, glyoxysomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40930Os.18963.1.S1_a_at11/114+24077363..24082114DNA binding protein GT-1, putative, expressed
LOC_Os04g40940Os.6028.1.S1_at10/114+24082347..24084087Mitotic spindle checkpoint protein MAD2, putative, expressed
LOC_Os04g40950Os.28374.1.S1_at11/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40950Os.57475.1.S1_x_at1/114+24086354..24090052Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os04g40960OsAffx.14225.1.S1_x_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40960OsAffx.14225.1.S1_at11/114+24090485..24091054F-box domain containing protein
LOC_Os04g40970OsAffx.26412.1.S1_at11/114+24093561..24100010ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g40980Os.10104.1.S1_at11/114+24102280..24106649Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os04g40990Os.26687.1.S1_at11/114+24106676..24109146Malate synthase, glyoxysomal, putative, expressed
LOC_Os04g41000NANA4+24115079..24115509hypothetical protein
LOC_Os04g41010NANA4+24116449..24116667hypothetical protein
LOC_Os04g41020Os.54586.1.S1_at11/114+24120514..24124686Kelch motif family protein, expressed
LOC_Os04g41030Os.26743.1.S1_at11/114+24128996..24131777Leucine Rich Repeat family protein, expressed
LOC_Os04g41040Os.6234.1.S1_s_at11/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed
LOC_Os04g41040Os.6234.1.S1_at10/114+24133366..24136326DNA-directed RNA polymerases II 24 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26687.1.S1_at--646--4511Chr04:24107248..24107272 (25 bp)
GCCGCTGTACAACCTGATGGAGGAC
LOC_Os04g40990
Os.26687.1.S1_at--786--9031Chr04:24107198..24107222 (25 bp)
TGCAGAACTGGCAGTGGCTCCGGCA
LOC_Os04g40990
Os.26687.1.S1_at--587--8271Chr04:24107034..24107058 (25 bp)
GGCAGGATCTTCAGCCGGCAGTGCA
LOC_Os04g40990
Os.26687.1.S1_at--520--1831Chr04:24106976..24107000 (25 bp)
ACGCGTACAACCTCATCGTGGTGCA
LOC_Os04g40990
Os.26687.1.S1_at--1076--7231Chr04:24106936..24106960 (25 bp)
GTCGCCGTGCAAGCTCTGAGAGCCT
LOC_Os04g40990
Os.26687.1.S1_at--311--8911Chr04:24106920..24106944 (25 bp)
TGAGAGCCTGAGCACATGTATACCT
LOC_Os04g40990
Os.26687.1.S1_at--512--6891Chr04:24106903..24106927 (25 bp)
GTATACCTCATCGTTGTAGCTACAT
LOC_Os04g40990
Os.26687.1.S1_at--390--8111Chr04:24106871..24106895 (25 bp)
GGACGAGGCTTCAAACTTTACTCTT
LOC_Os04g40990
Os.26687.1.S1_at--1142--2871Chr04:24106825..24106849 (25 bp)
AAGGTGGTAATAATTCTCTCCGTGT
LOC_Os04g40990
Os.26687.1.S1_at--135--371Chr04:24106816..24106840 (25 bp)
ATAATTCTCTCCGTGTAACTTCTCC
LOC_Os04g40990
Os.26687.1.S1_at--555--2511Chr04:24106800..24106824 (25 bp)
AACTTCTCCGAGTACTTTGCTCATA
LOC_Os04g40990
Target Sequence 
GCCGCTGTACAACCTGATGGAGGACGCCGCCACCGCGGAGATCAGCCGGGTGCAGAACTGGCAGTGGCTCCGGCACGGCG
CGGTGCTGGACGCCGGCGGCGTGGAGGTCCGGGCCACGCCCGAGCTGCTGGCGCGCGTCGTGGAGGTGGAGATGGCGAGG
GTGGAGGCCGAGGTGGGCGCCGAGAGGTTCCGGCGCGGCCGGTACGCGGAGGCCGGCAGGATCTTCAGCCGGCAGTGCAC
CGCGCCGGAGCTGGACGACTTCCTCACGCTCGACGCGTACAACCTCATCGTGGTGCACCACCCCGGAGCATCGTCGCCGT
GCAAGCTCTGAGAGCCTGAGCACATGTATACCTCATCGTTGTAGCTACATATAATAAGGACGAGGCTTCAAACTTTACTC
TTAGAATACTTACATATATATACAAGGTGGTAATAATTCTCTCCGTGTAACTTCTCCGAGTACTTTGCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis