Browse Element(s) Details


OsAffx.18400.1.S1_at

Description tigr:9638.m02182
TID=OsAffx.18400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2573411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25710Os.27691.2.S1_x_at3/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25710Os.27691.1.S1_x_at2/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25720NANA10+12987118..12990891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25730OsAffx.29207.2.S1_at10/1110+12995795..12996854hypothetical protein
LOC_Os10g25730OsAffx.29207.1.S1_x_at6/1110+12995795..12996854hypothetical protein
LOC_Os10g25734OsAffx.18400.1.S1_at11/1110+13002833..13003766hypothetical protein
LOC_Os10g25740NANA10+13007976..13008338hypothetical protein
LOC_Os10g25750Os.26886.6.S1_s_at8/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25750Os.26886.2.S1_s_at7/1110+13009431..13012551transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.1.S1_x_at8/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25760Os.26886.3.S1_x_at3/1110+13014000..13017338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25770Os.9729.4.S1_a_at11/1110+13021574..13025927Transcription initiation factor IIE beta subunit, putative, expressed
LOC_Os10g25780Os.7216.1.S1_at11/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed
LOC_Os10g25780OsAffx.5776.1.S1_x_at1/1110+13028198..13031796Cell elongation protein DIMINUTO, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18400.1.S1_at--10--311Chr10:13002863..13002887 (25 bp)
ATAGCCCCTAGCAGTGGTGATCCAG
LOC_Os10g25734
OsAffx.18400.1.S1_at--430--7531Chr10:13002910..13002934 (25 bp)
GTGGCACCGCAGGAAGGAAGCACAT
LOC_Os10g25734
OsAffx.18400.1.S1_at--786--931Chr10:13002924..13002948 (25 bp)
AGGAAGCACATGCATTCTACCCGAG
LOC_Os10g25734
OsAffx.18400.1.S1_at--883--4931Chr10:13002935..13003044 (25 bp)
GCATTCTACCCGAGCGTAGGATTAA
LOC_Os10g25734
OsAffx.18400.1.S1_at--956--331Chr10:13003540..13003564 (25 bp)
ATAACTTTTGCATCCAATTGCTCGT
LOC_Os10g25734
OsAffx.18400.1.S1_at--1104--3171Chr10:13003554..13003578 (25 bp)
CAATTGCTCGTTTGTGTGCCCACAT
LOC_Os10g25734
OsAffx.18400.1.S1_at--222--7471Chr10:13003567..13003591 (25 bp)
GTGTGCCCACATGCCTTGATATGCA
LOC_Os10g25734
OsAffx.18400.1.S1_at--595--791Chr10:13003591..13003615 (25 bp)
ATGTGGGCACACAAACAAGCAATTT
LOC_Os10g25734
OsAffx.18400.1.S1_at--1038--7611Chr10:13003622..13003646 (25 bp)
GGGAAATTCATTTTCTCACTTGAAA
LOC_Os10g25734
OsAffx.18400.1.S1_at--723--7651Chr10:13003665..13003689 (25 bp)
GGGAGTGCCATGACAAACTTACCTG
LOC_Os10g25734
OsAffx.18400.1.S1_at--120--9031Chr10:13003688..13003712 (25 bp)
TGCACCATGTCCCAGCGAAGTAGTT
LOC_Os10g25734
Target Sequence 
ATAGCCCCTAGCAGTGGTGATCCAGATCCAGAGGCCGACGGAGGAGAGTGGCACCGCAGGAAGGAAGCACATGCATTCTA
CCCGAGCGTAGGATTAAATAACTTTTGCATCCAATTGCTCGTTTGTGTGCCCACATGCCTTGATATGCATGTGGGCACAC
AAACAAGCAATTTGTATGAGGGAAATTCATTTTCTCACTTGAAACTAAAGGAGATAAAAAAGGGGAGTGCCATGACAAAC
TTACCTGCACCATGTCCCAGCGAAGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis