Browse Element(s) Details


Os.27322.3.S1_x_at

Description gb:NM_191835.1
DB_XREF= gi:34910753
GEN=P0042A10.6
TID=Os.27322.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.6 (P0042A10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0042A10.6 (P0042A10.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5264011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52600NANA1+30564807..30567609hypothetical protein
LOC_Os01g52610Os.33816.1.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610Os.33816.2.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.12648.1.S1_at2/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.18402.1.S1_at1/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27322.3.S1_x_at--53--10211Chr01:30588015..30588146 (25 bp)
TATTCTTGCACCTGGCTGGGAGTGT
LOC_Os01g52640
Os.27322.3.S1_x_at--265--6911Chr01:30588172..30588196 (25 bp)
GTATGCTCTGTGCAGTTTCAACCTG
LOC_Os01g52640
Os.27322.3.S1_x_at--985--91Chr01:30588197..30588221 (25 bp)
ATTCTGCTCGTTCCATTGCAATTGG
LOC_Os01g52640
Os.27322.3.S1_x_at--536--4071Chr01:30588265..30588289 (25 bp)
CGAGCTCCTTATTGTACGTTAGTTG
LOC_Os01g52640
Os.27322.3.S1_x_at--132--4971Chr01:30588328..30588352 (25 bp)
GCATCAACTATAGTGTCCGCATCTA
LOC_Os01g52640
Os.27322.3.S1_x_at--662--9911Chr01:30588351..30588375 (25 bp)
TACTGACAACTCCTTGAAGCTCTGG
LOC_Os01g52640
Os.27322.3.S1_x_at--447--7231Chr01:30588410..30588434 (25 bp)
GTCCGCTTCGGACATTTACAGGTCA
LOC_Os01g52640
Os.27322.3.S1_x_at--82--831Chr01:30589113..30589137 (25 bp)
ATGGTTACATTGCTACTGGCTCAGA
LOC_Os01g52640
Os.27322.3.S1_x_at--699--7091Chr01:30589727..30589751 (25 bp)
GTCACAGACCCAATATCAGGCCAGG
LOC_Os01g52640
Os.27322.3.S1_x_at--118--5771Chr01:30589757..30589781 (25 bp)
GACGATCCATCACAGTTCATTTCAT
LOC_Os01g52640
Os.27322.3.S1_x_at--608--9711Chr01:30589805..30589829 (25 bp)
TCAACGCTTCTTTCTGCTAATTCCA
LOC_Os01g52640
Target Sequence 
TATTCTTGCACCTGGCTGGGAGTGTTGGCACTATCAGAACAAGAGCAAATGTATGCTCTGTGCAGTTTCAACCTGATTCT
GCTCGTTCCATTGCAATTGGATCAGCAGATCACAAAATTTACTGCTATGATCTTCGAAACATACGAGCTCCTTATTGTAC
GTTAGTTGGCCACACAAAAACAGTTAGCTATGTTAAGTATGTGGATGCATCAACTATAGTGTCCGCATCTACTGACAACT
CCTTGAAGCTCTGGGACTTGTCCATGAGTCAGGCAAGGATAATTGACAGTCCGCTTCGGACATTTACAGGTCATACAAAC
ACTAAGAATTTTGTTGGACTTTCTATATCTGATGGTTACATTGCTACTGGCTCAGAGACAAATGAGGTTTTTGTCTACCA
CAAAGCATTTCCAATGCCAGTCTTGGCATATAAATTCAGTGTCACAGACCCAATATCAGGCCAGGAGATTGACGATCCAT
CACAGTTCATTTCATGCGTGTGTTGGAGAGGGCAGTCCTCAACGCTTCTTTCTGCTAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27322.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis