Browse Element(s) Details


Os.13994.1.S1_at

Description gb:AK108128.1
DB_XREF= gi:32993337
TID=Os.13994.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.7 (P0042A10.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D07, full insert sequence.
FL= gb:AK108128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5265011/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52600NANA1+30564807..30567609hypothetical protein
LOC_Os01g52610Os.33816.1.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610Os.33816.2.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.12648.1.S1_at2/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.18402.1.S1_at1/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13994.1.S1_at--976--4651Chr01:30590768..30590792 (25 bp)
GCGGCTACTTCCTGATCCAGACGGG
LOC_Os01g52650
Os.13994.1.S1_at--612--3951Chr01:30590649..30590673 (25 bp)
CGGAAGACGGGTTCGCCGCTCAAGT
LOC_Os01g52650
Os.13994.1.S1_at--415--9731Chr01:30590630..30590654 (25 bp)
TCAAGTTCCGCAGGTTCGTGGCGCT
LOC_Os01g52650
Os.13994.1.S1_at--434--4591Chr01:30590554..30590578 (25 bp)
GCGAGACCCCAAGAAATGCTGACTT
LOC_Os01g52650
Os.13994.1.S1_at--509--3851Chr01:30590536..30590560 (25 bp)
CTGACTTTCTGATTAGCGGTAACGT
LOC_Os01g52650
Os.13994.1.S1_at--42--4131Chr01:30590523..30590547 (25 bp)
TAGCGGTAACGTGTTTGGGACTTTG
LOC_Os01g52650
Os.13994.1.S1_at--15--7551Chr01:30590484..30590508 (25 bp)
GTGGCTGTGCACTTCGAATTCTACA
LOC_Os01g52650
Os.13994.1.S1_at--421--5211Chr01:30590469..30590493 (25 bp)
GAATTCTACAACTTGGTCACAGTTT
LOC_Os01g52650
Os.13994.1.S1_at--664--9691Chr01:30590453..30590477 (25 bp)
TCACAGTTTGTGTGTGGCGTGTGCC
LOC_Os01g52650
Os.13994.1.S1_at--143--7331Chr01:30590410..30590434 (25 bp)
GTGCATTTCCGCATCCAGCAAATAA
LOC_Os01g52650
Os.13994.1.S1_at--21--2871Chr01:30590374..30590398 (25 bp)
AAGTGTTGGACGTAGCCCCAGACCT
LOC_Os01g52650
Target Sequence 
GCGGCTACTTCCTGATCCAGACGGGGACGCAGGTGGCGGCGTTCACGAGCAAGGACTGCAGGGTGTACGTGCCGCGGTCG
CCGTCGCGTGCGGCGTGCGGCGTGGCGCTCCAGCCTGGGCGGAAGACGGGTTCGCCGCTCAAGTTCCGCAGGTTCGTGGC
GCTCCCCGACGGGCTGCAAGGGCGCTACTCCGCCGGCAACTTCGTCTTCGGCCCGCGAGACCCCAAGAAATGCTGACTTT
CTGATTAGCGGTAACGTGTTTGGGACTTTGGGGCTGGGGGTGGTGTGGCTGTGCACTTCGAATTCTACAACTTGGTCACA
GTTTGTGTGTGGCGTGTGCCCGGTGGATCGACGTGGACGTGCATTTCCGCATCCAGCAAATAATGATGATAAAAAAGTGT
TGGACGTAGCCCCAGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis