Browse Element(s) Details


OsAffx.27266.1.S1_at

Description tigr:9633.m03823
TID=OsAffx.27266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4088010/11hypothetical protein
LOC_Os06g388101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_x_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_x_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.15051.1.S1_x_at1/115+23875485..23876353hypothetical protein
LOC_Os05g40860Os.28943.1.S1_x_at3/115+23878713..23881769retrotransposon protein, putative, unclassified
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27266.1.S1_at--897--8951Chr05:23891313..23891337 (25 bp)
TGACAGCCAGCCAGCGGCAGCTGTG
LOC_Os05g40880
OsAffx.27266.1.S1_at--1117--3871NONE
CTGTGGAGGATGGATTTTCATAATC
NONE
OsAffx.27266.1.S1_at--901--9737Chr05:23891926..23891950 (25 bp)
TAATCTGGGTAAAAACTGGACTGTT
LOC_Os05g40880
OsAffx.27266.1.S1_at--905--3271Chr05:23892010..23892034 (25 bp)
CAAACAGGCCCCAAGTCTTATACGA
LOC_Os05g40880
OsAffx.27266.1.S1_at--347--7151Chr05:23892024..23892048 (25 bp)
GTCTTATACGAAATCATGCCTCGCA
LOC_Os05g40880
OsAffx.27266.1.S1_at--190--592Chr05:23892039..23892063 (25 bp)
ATGCCTCGCATACGGAAGGTGTTCC
LOC_Os05g40880
OsAffx.27266.1.S1_at--1037--8031Chr05:23892106..23892130 (25 bp)
GGAGTACTCAGATTGTATACATTCT
LOC_Os05g40880
OsAffx.27266.1.S1_at--703--331Chr05:23892122..23892146 (25 bp)
ATACATTCTTGTTTCCCTAGTTCTA
LOC_Os05g40880
OsAffx.27266.1.S1_at--615--3491Chr05:23892147..23892171 (25 bp)
CATGGACAAGGGAACATTTGGGTAT
LOC_Os05g40880
OsAffx.27266.1.S1_at--778--6891Chr05:23892168..23892192 (25 bp)
GTATAAATACAAGATCCCTGGGAGG
LOC_Os05g40880
OsAffx.27266.1.S1_at--177--8051Chr05:23892191..23892215 (25 bp)
GGAGAAAGTGGAGGCCCAATCATCA
LOC_Os05g40880
Target Sequence 
TGACAGCCAGCCAGCGGCAGCTGTGGAGGATGGATTTTCATAATCTGGGTAAAAACTGGACTGTTTGGGGGAGCTTCTGG
CAACTAGAGATTCTAGGAGAAGCTGCAGCTGCTAGAAGCTCCCCCAAACAGGCCCCAAGTCTTATACGAAATCATGCCTC
GCATACGGAAGGTGTTCCAGATAAGGAAGAAGAAGCAGGGTTTAATATTGGAAACTATAAGGAGTACTCAGATTGTATAC
ATTCTTGTTTCCCTAGTTCTACATGGACAAGGGAACATTTGGGTATAAATACAAGATCCCTGGGAGGAGAAAGTGGAGGC
CCAATCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis