Browse Element(s) Details


Os.10823.1.S1_x_at

Description gb:AK062926.1
DB_XREF= gi:32972944
TID=Os.10823.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-A02, full insert sequence.
FL= gb:AK062926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4089011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_x_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_x_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.15051.1.S1_x_at1/115+23875485..23876353hypothetical protein
LOC_Os05g40860Os.28943.1.S1_x_at3/115+23878713..23881769retrotransposon protein, putative, unclassified
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10823.1.S1_x_at--989--2131Chr05:23895424..23895448 (25 bp)
ACAGATCACACACACACCAAGAACA
LOC_Os05g40890
Os.10823.1.S1_x_at--873--3231Chr05:23895441..23895465 (25 bp)
CAAGAACACCTAGCGGCGAGCTCTT
LOC_Os05g40890
Os.10823.1.S1_x_at--1052--6731Chr05:23895479..23895503 (25 bp)
GTTCTTGGCTTTGTCTGGCTCGGTT
LOC_Os05g40890
Os.10823.1.S1_x_at--478--8491Chr05:23895494..23895518 (25 bp)
TGGCTCGGTTTGCTTCTGCTTTTGC
LOC_Os05g40890
Os.10823.1.S1_x_at--918--1311Chr05:23895541..23895565 (25 bp)
AGAGGAGGCCTCGTGACCTCGTCGC
LOC_Os05g40890
Os.10823.1.S1_x_at--657--9471Chr05:23895790..23896023 (25 bp)
TCTGAACCTCTCTCCAGATGAGATG
LOC_Os05g40890
Os.10823.1.S1_x_at--375--6131Chr05:23896081..23896105 (25 bp)
GAGGTGAACGACTACCCCGGGTCAG
LOC_Os05g40890
Os.10823.1.S1_x_at--627--7811Chr05:23896100..23896124 (25 bp)
GGTCAGGACCCAACAACCGCCATGA
LOC_Os05g40890
Os.10823.1.S1_x_at--609--8911Chr05:23896122..23896146 (25 bp)
TGACCCTCCCAAAGGTCCTGGGAGA
LOC_Os05g40890
Os.10823.1.S1_x_at--261--2891Chr05:23896133..23896157 (25 bp)
AAGGTCCTGGGAGAGCATGAATTCA
LOC_Os05g40890
Os.10823.1.S1_x_at--1151--10491Chr05:23896439..23896463 (25 bp)
TTAATCAGTGATTTTGTCGACATGC
LOC_Os05g40890
Target Sequence 
ACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTT
TGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTG
CCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAAC
ACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCG
AGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGC
ATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10823.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis