Browse Element(s) Details


OsAffx.4583.1.S1_s_at

Description tigr:9633.m03826
TID=OsAffx.4583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4090011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein
LOC_Os05g40930NANA5+23923527..23924994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40940OsAffx.25819.2.S1_at11/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.3.S1_at3/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.13875.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40950Os.56225.1.S1_at11/115+23930253..23931294expressed protein
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4583.1.S1_s_at--620--7651Chr05:23910161..23910185 (25 bp)
GGGATGACTGGTGCTGCAGCCATCC
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--140--7771Chr05:23910152..23910176 (25 bp)
GGTGCTGCAGCCATCCGAGGCACAA
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--873--5071Chr05:23910146..23910170 (25 bp)
GCAGCCATCCGAGGCACAACTGAAG
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--546--4431Chr05:23910143..23910167 (25 bp)
GCCATCCGAGGCACAACTGAAGAGA
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--399--9271Chr05:23910139..23910163 (25 bp)
TCCGAGGCACAACTGAAGAGAAAAT
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--195--2991Chr05:23909844..23909868 (25 bp)
AATGTTCGATTGTGTCTGGTGTGCC
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--395--6611Chr05:23909837..23909861 (25 bp)
GATTGTGTCTGGTGTGCCAGGACCT
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--434--7171Chr05:23909831..23909855 (25 bp)
GTCTGGTGTGCCAGGACCTCTGTTT
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--380--7811Chr05:23909465..23909489 (25 bp)
GGTCTTTGAAGACACTTCAGGAGTG
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--519--8031Chr05:23909446..23909470 (25 bp)
GGAGTGGACAACAAATACACCATTG
LOC_Os05g40900
OsAffx.4583.1.S1_s_at--73--2271Chr05:23909434..23909458 (25 bp)
AAATACACCATTGTGCAATTCACAG
LOC_Os05g40900
Target Sequence 
GGGATGACTGGTGCTGCAGCCATCCGAGGCACAACTGAAGAGAAAATTGTAAAATGTTCGATTGTGTCTGGTGTGCCAGG
ACCTCTGTTTATCTTGGATAAAGTAAAGGTCTTTGAAGACACTTCAGGAGTGGACAACAAATACACCATTGTGCAATTCA
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4583.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis