Browse Element(s) Details


OsAffx.4582.1.S1_at

Description tigr:9633.m03820
TID=OsAffx.4582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4085011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40810OsAffx.4581.1.S1_at11/115+23848492..23854653BRCA1 C Terminus domain containing protein
LOC_Os05g40820Os.10406.1.S1_at11/115+23856691..2385992860S ribosomal protein L24, putative, expressed
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_x_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_x_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.15051.1.S1_x_at1/115+23875485..23876353hypothetical protein
LOC_Os05g40860Os.28943.1.S1_x_at3/115+23878713..23881769retrotransposon protein, putative, unclassified
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4582.1.S1_at--52--1511Chr05:23875675..23875699 (25 bp)
AGCAGCCAACAGCAACACCTGTCGT
LOC_Os05g40850
OsAffx.4582.1.S1_at--345--2491Chr05:23875682..23875706 (25 bp)
AACAGCAACACCTGTCGTCTCCAAA
LOC_Os05g40850
OsAffx.4582.1.S1_at--559--1491Chr05:23875685..23875709 (25 bp)
AGCAACACCTGTCGTCTCCAAACAT
LOC_Os05g40850
OsAffx.4582.1.S1_at--99--9411Chr05:23875696..23875720 (25 bp)
TCGTCTCCAAACATCTCTGCAGATG
LOC_Os05g40850
OsAffx.4582.1.S1_at--540--7171Chr05:23875698..23875720 (23 bp)
GTCTCCAAACATCTCTGCAGATGAC
LOC_Os05g40850
OsAffx.4582.1.S1_at--333--9511Chr05:23875709..23875938 (25 bp)
TCTCTGCAGATGACATGGTGGCGGC
LOC_Os05g40850
OsAffx.4582.1.S1_at--453--3371Chr05:23876010..23876034 (25 bp)
CACCAGGAAGAGAAATGTCCGTCCA
LOC_Os05g40850
OsAffx.4582.1.S1_at--983--5351Chr05:23876016..23876040 (25 bp)
GAAGAGAAATGTCCGTCCAGGGCAT
LOC_Os05g40850
OsAffx.4582.1.S1_at--767--7531Chr05:23876042..23876066 (25 bp)
GTGGCGGCGGCAACGAATAATGTGG
LOC_Os05g40850
OsAffx.4582.1.S1_at--481--9752Chr05:23876059..23876083 (25 bp)
TAATGTGGAGGTGAATGACTACCCG
LOC_Os05g40850
OsAffx.4582.1.S1_at--1044--3911Chr05:23876265..23876289 (25 bp)
CGGCGACGACCGATGTGGAGGTGAA
LOC_Os05g40850
Target Sequence 
AGCAGCCAACAGCAACACCTGTCGTCTCCAAACATCTCTGCAGATGACATGGTGGCGGCGACGACGACGGACGTGGAGGT
GAATGACTACCCAGCGCCAGGAGCCAATCCCCGCCATAACCCTAAACGTCCACCAGGAAGAGAAATGTCCGTCCAGGGCA
TGGTGGCGGCGGCAACGAATAATGTGGAGGTGAATGACTACCCGGCGCCGGGAGCCAACCCCCGCCATAACCCTAAAAGT
CCACCAGGGAGAGAAATGTCCGTCCAGGGCATGGTGGCAGCGGCGACGGACGTGGAGGTGAATGACTACCCAGCGCCAGG
AGCCAATCCCCGCCATAACCCTAAACGTCCACCAGGGAGAGAAATGTCCGTCCAGGGCATGGTGGCGGCGACGACCGATG
TGGAGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis