Browse Element(s) Details


Os.10406.1.S1_at

Description gb:AK059430.1
DB_XREF= gi:32969448
TID=Os.10406.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F02, full insert sequence.
FL= gb:AK059430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4082011/1160S ribosomal protein L24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40790Os.13515.1.S1_at11/115+23833218..23840358NOT2/NOT3/NOT5 family protein, expressed
LOC_Os05g40800OsAffx.15050.1.S1_at11/115+23842764..23845047hypothetical protein
LOC_Os05g40810OsAffx.4581.1.S1_at11/115+23848492..23854653BRCA1 C Terminus domain containing protein
LOC_Os05g40820Os.10406.1.S1_at11/115+23856691..2385992860S ribosomal protein L24, putative, expressed
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_x_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_x_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.15051.1.S1_x_at1/115+23875485..23876353hypothetical protein
LOC_Os05g40860Os.28943.1.S1_x_at3/115+23878713..23881769retrotransposon protein, putative, unclassified
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10406.1.S1_at--1091--9731Chr05:23857535..23857559 (25 bp)
TCAATTGTTGGTGCTTCGTTGGAAG
LOC_Os05g40820
Os.10406.1.S1_at--53--4471Chr05:23857485..23857509 (25 bp)
GCCTGAAGTTCGTGATGCTGCTAGA
LOC_Os05g40820
Os.10406.1.S1_at--174--6351Chr05:23857472..23857496 (25 bp)
GATGCTGCTAGAGAAGCTGCTCTTC
LOC_Os05g40820
Os.10406.1.S1_at--576--7051Chr05:23857014..23857038 (25 bp)
GTAACCAAGTCCCAGAAGTCGCAGT
LOC_Os05g40820
Os.10406.1.S1_at--770--2851Chr05:23856999..23857023 (25 bp)
AAGTCGCAGTCGAAGGGTGCCGCCC
LOC_Os05g40820
Os.10406.1.S1_at--919--4571Chr05:23856931..23856955 (25 bp)
GCGCTGAAGATTTCTTGATCCCCAG
LOC_Os05g40820
Os.10406.1.S1_at--939--10771Chr05:23856917..23856941 (25 bp)
TTGATCCCCAGGAAAGGGTCGCCTG
LOC_Os05g40820
Os.10406.1.S1_at--182--4491Chr05:23856886..23856910 (25 bp)
GCCGGCTGTCTAAATCGTATCTCAT
LOC_Os05g40820
Os.10406.1.S1_at--137--6911Chr05:23856870..23856894 (25 bp)
GTATCTCATCAAAAGCTACCCTGTA
LOC_Os05g40820
Os.10406.1.S1_at--930--4831Chr05:23856856..23856880 (25 bp)
GCTACCCTGTAGAACCTCTGTTAAA
LOC_Os05g40820
Os.10406.1.S1_at--525--2991Chr05:23856815..23856839 (25 bp)
AATGTTTTAACATCGCCACTGGAGA
LOC_Os05g40820
Target Sequence 
TCAATTGTTGGTGCTTCGTTGGAAGTCATCCAAAAGAAGAGAGCTGAAAAGCCTGAAGTTCGTGATGCTGCTAGAGAAGC
TGCTCTTCGTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCC
AGAAGTCGCAGTCGAAGGGTGCCGCCCCGAGGGGTTCCAAGGGCCCGAAGATTGGTGGTGGTGGTGGAAAGCGCTGAAGA
TTTCTTGATCCCCAGGAAAGGGTCGCCTGGTTCTCGCCGGCTGTCTAAATCGTATCTCATCAAAAGCTACCCTGTAGAAC
CTCTGTTAAATTAGCACTACTGCCAAAATGTTTTAACATCGCCACTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis