Browse Element(s) Details


OsAffx.15051.1.S1_x_at

Description tigr:9633.m03819
TID=OsAffx.15051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4084011/11hypothetical protein
LOC_Os05g408501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40810OsAffx.4581.1.S1_at11/115+23848492..23854653BRCA1 C Terminus domain containing protein
LOC_Os05g40820Os.10406.1.S1_at11/115+23856691..2385992860S ribosomal protein L24, putative, expressed
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_x_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_x_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.15051.1.S1_x_at1/115+23875485..23876353hypothetical protein
LOC_Os05g40860Os.28943.1.S1_x_at3/115+23878713..23881769retrotransposon protein, putative, unclassified
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15051.1.S1_x_at--859--7251Chr05:23872843..23872867 (25 bp)
GTCCTGGCTATGTCCTGCCTATTGC
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--816--8491Chr05:23872847..23872871 (25 bp)
TGGCTATGTCCTGCCTATTGCTCCT
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--707--9151Chr05:23872892..23873008 (25 bp)
TGCCCGTGTCGGGAATCGTGCACTT
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--372--4251Chr05:23872895..23873011 (25 bp)
CCGTGTCGGGAATCGTGCACTTGAG
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--736--2471Chr05:23873023..23873047 (25 bp)
AACACCCGTCATCTCGAAACATCTA
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--1091--3351Chr05:23873025..23873049 (25 bp)
CACCCGTCATCTCGAAACATCTATG
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--508--652Chr05:23873047..23873071 (25 bp)
ATGCAGATGTAGTTAATCTTTCTCA
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--323--6951Chr05:23873055..23873079 (25 bp)
GTAGTTAATCTTTCTCATGTCCTTC
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--98--6771Chr05:23873058..23873082 (25 bp)
GTTAATCTTTCTCATGTCCTTCAAT
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--557--7331Chr05:23873072..23873095 (24 bp)
TGTCCTTCAATTTCTGAATTCCCGG
LOC_Os05g40840
OsAffx.15051.1.S1_x_at--71--4311Chr05:23873075..23873095 (21 bp)
CCTTCAATTTCTGAATTCCCGGATA
LOC_Os05g40840
Target Sequence 
GTCCTGGCTATGTCCTGCCTATTGCTCCTCCCACTACTCGTCTCCTCGGTGCCCGTGTCGGGAATCGTGCACTTGAGCAG
CCAACAACAACACCCGTCATCTCGAAACATCTATGCAGATGTAGTTAATCTTTCTCATGTCCTTCAATTTCTGAATTCCC
GGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15051.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis