Browse Element(s) Details


OsAffx.27995.1.S1_at

Description tigr:9634.m03697
TID=OsAffx.27995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3876011/11Leucine Rich Repeat family protein
LOC_Os06g387301/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38700NANA6+22978951..22981668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38710OsAffx.27993.1.S1_at11/116+22982848..22983680hypothetical protein
LOC_Os06g38720OsAffx.15824.1.S1_at11/116+22987756..22988115hypothetical protein
LOC_Os06g38730OsAffx.27995.1.S1_at1/116+22991414..22994906Leucine Rich Repeat family protein, expressed
LOC_Os06g38740OsAffx.27994.1.S1_at11/116+22997559..22998335hypothetical protein
LOC_Os06g38750OsAffx.5050.1.S1_at11/116+22998850..23000440expressed protein
LOC_Os06g38760OsAffx.27995.1.S1_at11/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38760Os.27322.1.S1_x_at1/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38770NANA6+23015239..23016255expressed protein
LOC_Os06g38780OsAffx.27996.1.S1_at4/116+23016864..23019935Leucine Rich Repeat family protein, expressed
LOC_Os06g38790OsAffx.27997.1.S1_at11/116+23022773..23025628ZmEBE-1 protein, putative
LOC_Os06g38800OsAffx.5052.1.S1_at11/116+23032949..23033371hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27995.1.S1_at--490--3672Chr06:23007000..23007024 (25 bp)
CTTTATGTTCTTCAGTGGATGCCAC
LOC_Os06g38760
OsAffx.27995.1.S1_at--182--8271Chr06:23007028..23007052 (25 bp)
GGCAGACTTCAAAGCCCTGGTGTTC
LOC_Os06g38760
OsAffx.27995.1.S1_at--333--1671Chr06:23007040..23007064 (25 bp)
AGCCCTGGTGTTCCAATACATGCGA
LOC_Os06g38760
OsAffx.27995.1.S1_at--642--8311Chr06:23007084..23007108 (25 bp)
GGCTACATCCAAAGGCTCATGAACT
LOC_Os06g38760
OsAffx.27995.1.S1_at--1071--291Chr06:23007149..23007173 (25 bp)
ATAGCCTTGGATGTGGCGTTTGCAT
LOC_Os06g38760
OsAffx.27995.1.S1_at--209--7551Chr06:23007161..23007185 (25 bp)
GTGGCGTTTGCATTAGATTATCTTC
LOC_Os06g38760
OsAffx.27995.1.S1_at--293--351Chr06:23007186..23007210 (25 bp)
ATAACCAGTGTGCAACTCCACTAAT
LOC_Os06g38760
OsAffx.27995.1.S1_at--32--5731Chr06:23007307..23007331 (25 bp)
GACTGCCAATCAAGATACCTCGACA
LOC_Os06g38760
OsAffx.27995.1.S1_at--173--9971Chr06:23007322..23007346 (25 bp)
TACCTCGACAAGTTTGCCTTGCCTA
LOC_Os06g38760
OsAffx.27995.1.S1_at--970--8171Chr06:23007589..23007613 (25 bp)
GGAAGCACAACTCTGCATGAATTTG
LOC_Os06g38760
OsAffx.27995.1.S1_at--386--5651Chr06:23007616..23007640 (25 bp)
GACAGAGCATTTCCCAACAATATCA
LOC_Os06g38760
Target Sequence 
CTTTATGTTCTTCAGTGGATGCCACTGGGGCAGACTTCAAAGCCCTGGTGTTCCAATACATGCGAAATGGGAACCTAGAC
ACATGGCTACATCCAAAGGCTCATGAACTTAGTCAAAGAAAGGCTCTAAATATTTGCCAAAGAGTTAATATAGCCTTGGA
TGTGGCGTTTGCATTAGATTATCTTCATAACCAGTGTGCAACTCCACTAATACATTGTGACTTAAAGCCAAGCAATATTC
TTTTGGACCTCGACATGGTTGCATATGTCAGTGACTTTGGCCTAGCAAGATTTATATGCAATAGATTGACTGCCAATCAA
GATACCTCGACAAGTTTGCCTTGCCTAAAAGGATCAATCGGATACATTCCGCCAGAGTATGGCATGAGCAAGGATATCTC
AACCAAGGGTGATGTCTACAGTTTTGGAATACTTTTGTTAGAAATTATTACTGGGAGAAGCCCAACTGATGAAATATTTA
ATGGAAGCACAACTCTGCATGAATTTGTTGACAGAGCATTTCCCAACAATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis