Browse Element(s) Details


OsAffx.5050.1.S1_at

Description tigr:9634.m03696
TID=OsAffx.5050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3875011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38700NANA6+22978951..22981668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38710OsAffx.27993.1.S1_at11/116+22982848..22983680hypothetical protein
LOC_Os06g38720OsAffx.15824.1.S1_at11/116+22987756..22988115hypothetical protein
LOC_Os06g38730OsAffx.27995.1.S1_at1/116+22991414..22994906Leucine Rich Repeat family protein, expressed
LOC_Os06g38740OsAffx.27994.1.S1_at11/116+22997559..22998335hypothetical protein
LOC_Os06g38750OsAffx.5050.1.S1_at11/116+22998850..23000440expressed protein
LOC_Os06g38760OsAffx.27995.1.S1_at11/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38760Os.27322.1.S1_x_at1/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38770NANA6+23015239..23016255expressed protein
LOC_Os06g38780OsAffx.27996.1.S1_at4/116+23016864..23019935Leucine Rich Repeat family protein, expressed
LOC_Os06g38790OsAffx.27997.1.S1_at11/116+23022773..23025628ZmEBE-1 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5050.1.S1_at--251--9211Chr06:23000283..23000307 (25 bp)
TCCAGCCTCTCCAGGGTTAAGCATA
LOC_Os06g38750
OsAffx.5050.1.S1_at--991--10491Chr06:23000267..23000291 (25 bp)
TTAAGCATAGAACTGACCATCCACG
LOC_Os06g38750
OsAffx.5050.1.S1_at--476--291Chr06:23000261..23000285 (25 bp)
ATAGAACTGACCATCCACGCCGTGG
LOC_Os06g38750
OsAffx.5050.1.S1_at--708--1511Chr06:23000219..23000243 (25 bp)
AGCAGCGAGTCAAAGCCTCCTCCTG
LOC_Os06g38750
OsAffx.5050.1.S1_at--711--571Chr06:22999845..22999869 (25 bp)
ATCCAAGCCGACATGGCCCTCGTGA
LOC_Os06g38750
OsAffx.5050.1.S1_at--807--7371Chr06:22999824..22999848 (25 bp)
GTGACCCAATACCTGATCCTAAAAA
LOC_Os06g38750
OsAffx.5050.1.S1_at--222--8951Chr06:22999805..22999829 (25 bp)
TAAAAACCCTCCTCCTAGTCATCGA
LOC_Os06g38750
OsAffx.5050.1.S1_at--494--3711Chr06:22999502..22999815 (25 bp)
CTAGTCATCGAGTTGGTCCAGGGCC
LOC_Os06g38750
OsAffx.5050.1.S1_at--1092--491Chr06:22999496..22999516 (21 bp)
ATCGAGTTGGTCCAGGGCCTCCAAG
LOC_Os06g38750
OsAffx.5050.1.S1_at--5--7791Chr06:22999488..22999512 (25 bp)
GGTCCAGGGCCTCCAAGCCGTAATC
LOC_Os06g38750
OsAffx.5050.1.S1_at--47--2671Chr06:22999474..22999498 (25 bp)
AAGCCGTAATCCTGGTCAAGATCAA
LOC_Os06g38750
Target Sequence 
TCCAGCCTCTCCAGGGTTAAGCATAGAACTGACCATCCACGCCGTGGTCCGTCCCCTACCACCCAGCAGCGAGTCAAAGC
CTCCTCCTGCAGTTACGCCATCCGATGATGATCCAAGCCGACATGGCCCTCGTGACCCAATACCTGATCCTAAAAACCCT
CCTCCTAGTCATCGAGTTGGTCCAGGGCCTCCAAGCCGTAATCCTGGTCAAGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis