Browse Element(s) Details


Os.46546.2.S1_x_at

Description gb:NM_196115.1
DB_XREF= gi:37533589
TID=Os.46546.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46546 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative proton-dependent oligopeptide transport (OJ1208D02.10), mRNA.
PROD=putative proton-dependent oligopeptidetransport
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2256011/11POT family protein, expressed
LOC_Os03g045701/11POT family protein, expressed
LOC_Os10g022101/11POT family protein
LOC_Os10g020801/11POT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22510Os.46534.1.S1_at11/1110+11331217..11335217expressed protein
LOC_Os10g22510Os.46534.2.S1_x_at11/1110+11331217..11335217expressed protein
LOC_Os10g22520Os.7314.1.S1_at11/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.20993.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520Os.51832.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.9431.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46546.2.S1_x_at--418--4972Chr10:11360373..11360397 (25 bp)
GCATCGCGTGGCAGGTGCCGTCCTT
LOC_Os10g22560
Os.46546.2.S1_x_at--229--7531Chr10:11360366..11360390 (25 bp)
GTGGCAGGTGCCGTCCTTCTTCGTG
LOC_Os10g22560
Os.46546.2.S1_x_at--1112--4152Chr10:11360321..11360345 (25 bp)
CGCCGTCATCGGCATGCTGGAGTTC
LOC_Os10g22560
Os.46546.2.S1_x_at--516--4012Chr10:11360277..11360301 (25 bp)
CGTCGATGAAGAGCCTCGGCACGGC
LOC_Os10g22560
Os.46546.2.S1_x_at--700--9711Chr10:11360217..11360241 (25 bp)
TCAACTCCGGCATGCTCAGGGTGGT
LOC_Os10g22560
Os.46546.2.S1_x_at--473--2691Chr10:11360146..11360170 (25 bp)
AAGCTCGACGAGGGCCATCTGGACT
LOC_Os10g22560
Os.46546.2.S1_x_at--224--9471Chr10:11360115..11360139 (25 bp)
TCTGGATGATGGCTGCACTCAGCGT
LOC_Os10g22560
Os.46546.2.S1_x_at--973--8871Chr10:11360109..11360133 (25 bp)
TGATGGCTGCACTCAGCGTGCTCAA
LOC_Os10g22560
Os.46546.2.S1_x_at--441--9671Chr10:11360097..11360121 (25 bp)
TCAGCGTGCTCAACCTGCTGCAGTT
LOC_Os10g22560
Os.46546.2.S1_x_at--266--9091Chr10:11360091..11360115 (25 bp)
TGCTCAACCTGCTGCAGTTCCTGCA
LOC_Os10g22560
Os.46546.2.S1_x_at--1130--1211Chr10:11360076..11360100 (25 bp)
AGTTCCTGCACTGCTCAATCAGATT
LOC_Os10g22560
Target Sequence 
GCATCGCGTGGCAGGTGCCGTCCTTCTTCGTGCTGGGCGCCGGGGAGGTGTTCGCCGTCATCGGCATGCTGGAGTTCTGC
TACGAGCAGTCGCCGGCGTCGATGAAGAGCCTCGGCACGGCGCTCGTGCAGCTCGCCGTCGCCGTCGCCAACTACCTCAA
CTCCGGCATGCTCAGGGTGGTGGCGGCGGCCACGGCGCGCGGCGGCGGCGCCGGGTGGATCCCGGACAAGCTCGACGAGG
GCCATCTGGACTACTTCTTCTGGATGATGGCTGCACTCAGCGTGCTCAACCTGCTGCAGTTCCTGCACTGCTCAATCAGA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46546.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis