Browse Element(s) Details


OsAffx.32015.1.S1_at

Description tigr:9640.m03310
TID=OsAffx.32015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3429011/11F-box domain containing protein
LOC_Os10g225801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34240NANA12+20723393..20727139F-box domain containing protein
LOC_Os12g34250NANA12+20729859..20733108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34260Os.47463.1.S1_x_at2/1112+20735503..20739817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34270OsAffx.19962.1.S1_at11/1112+20741638..20744077F-box domain containing protein
LOC_Os12g34280NANA12+20746083..20746765hypothetical protein
LOC_Os12g34290OsAffx.32015.1.S1_at11/1112+20750484..20753888F-box domain containing protein
LOC_Os12g34300Os.47885.1.A1_at11/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_x_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34310OsAffx.19963.1.S1_at11/1112+20762595..20765232F-box domain containing protein
LOC_Os12g34320Os.52252.1.S1_at11/1112+20769394..20772085D-mannose binding lectin family protein, expressed
LOC_Os12g34330Os.54136.1.S1_at10/1112+20772833..20778265PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32015.1.S1_at--821--931Chr12:20752090..20752114 (25 bp)
AGGACATACCGAAACTTCCGAATAT
LOC_Os12g34290
OsAffx.32015.1.S1_at--41--351Chr12:20752128..20752152 (25 bp)
ATAACGGTAGCCATGTCCACAGATA
LOC_Os12g34290
OsAffx.32015.1.S1_at--764--6471Chr12:20752158..20752182 (25 bp)
GATACACACGCGGTAGCCATGTCCA
LOC_Os12g34290
OsAffx.32015.1.S1_at--451--6291Chr12:20752497..20752521 (25 bp)
GATGATTCCACTAGAGCGTCTTCGG
LOC_Os12g34290
OsAffx.32015.1.S1_at--196--5891Chr12:20752510..20752534 (25 bp)
GAGCGTCTTCGGATTGCAGACATAC
LOC_Os12g34290
OsAffx.32015.1.S1_at--770--7051Chr12:20752535..20752559 (25 bp)
GTAACTTTCTGCCTTTCGATGATCA
LOC_Os12g34290
OsAffx.32015.1.S1_at--979--8811Chr12:20753450..20753474 (25 bp)
TGTTGTGCGCATCCTGCCATGCAAA
LOC_Os12g34290
OsAffx.32015.1.S1_at--388--2351Chr12:20753472..20753802 (25 bp)
AAAGCATGTGTGACCGGATGCCACA
LOC_Os12g34290
OsAffx.32015.1.S1_at--936--7978Chr12:20753793..20753817 (25 bp)
GGATGCCACATCAGTGAAACGCCGA
LOC_Os12g34290
OsAffx.32015.1.S1_at--937--5551Chr12:20753816..20753840 (25 bp)
GAAACCAACCCTCTATGCTATCATG
LOC_Os12g34290
OsAffx.32015.1.S1_at--833--611Chr12:20753830..20753854 (25 bp)
ATGCTATCATGGGACCTAACTTGAA
LOC_Os12g34290
Target Sequence 
AGGACATACCGAAACTTCCGAATATAACAGATTTGAGAATAACGGTAGCCATGTCCACAGATACCATGGATACACACGCG
GTAGCCATGTCCACAGATACCATGGATACACACGCTATCGGGGCAAGCACAACCAAGCTCATTGCAAAGTTTAGTAGAAT
TGAGTATCTCTCCATTGACATTGACAAAAAGGCCGGTGATTGTACAAATTTTGACTGCAAATGTGAGCAATATAAAGGCT
GGAATAACAAGATGATTCCACTAGAGCGTCTTCGGATTGCAGACATACGTAACTTTCTGCCTTTCGATGATCAAATAGAA
TTGAACGTACAAGGAAAAGTTCAGTTCACTGTTGTGCGCATCCTGCCATGCAAAGCATGTGTGACCGGATGCCACATCAG
TGAAACGCCGAAACCAACCCTCTATGCTATCATGGGACCTAACTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis