Browse Element(s) Details


OsAffx.19963.1.S1_at

Description tigr:9640.m03312
TID=OsAffx.19963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3431011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34260Os.47463.1.S1_x_at2/1112+20735503..20739817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34270OsAffx.19962.1.S1_at11/1112+20741638..20744077F-box domain containing protein
LOC_Os12g34280NANA12+20746083..20746765hypothetical protein
LOC_Os12g34290OsAffx.32015.1.S1_at11/1112+20750484..20753888F-box domain containing protein
LOC_Os12g34300Os.47885.1.A1_at11/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_x_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34310OsAffx.19963.1.S1_at11/1112+20762595..20765232F-box domain containing protein
LOC_Os12g34320Os.52252.1.S1_at11/1112+20769394..20772085D-mannose binding lectin family protein, expressed
LOC_Os12g34330Os.54136.1.S1_at10/1112+20772833..20778265PHD-finger family protein, expressed
LOC_Os12g34340Os.16910.1.S1_at10/1112+20780843..20782892pentatricopeptide, putative, expressed
LOC_Os12g34350Os.11418.1.S1_at11/1112+20782970..20787310expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19963.1.S1_at--148--6411Chr12:20763655..20763679 (25 bp)
GATCGGCTCGACGTCGAACTGACAG
LOC_Os12g34310
OsAffx.19963.1.S1_at--648--3351Chr12:20764512..20764536 (25 bp)
CAGAACTTCTCAACGTTACCGACTT
LOC_Os12g34310
OsAffx.19963.1.S1_at--353--6671Chr12:20764608..20764632 (25 bp)
GTTGCAAAGCTGAATGTCTCTCTAT
LOC_Os12g34310
OsAffx.19963.1.S1_at--303--3391Chr12:20764639..20764884 (25 bp)
CAGCGACCAGGGACGTAATCAGTGT
LOC_Os12g34310
OsAffx.19963.1.S1_at--731--5211Chr12:20764887..20764911 (25 bp)
GAATTCTATGTGTATCTGTGACCAA
LOC_Os12g34310
OsAffx.19963.1.S1_at--1043--8151Chr12:20764929..20764953 (25 bp)
GGAAACGATCTCTCTTGAGTGCCTT
LOC_Os12g34310
OsAffx.19963.1.S1_at--604--6111Chr12:20764945..20764969 (25 bp)
GAGTGCCTTCGAATTGTGGAGATCA
LOC_Os12g34310
OsAffx.19963.1.S1_at--882--1271Chr12:20764964..20764988 (25 bp)
AGATCAGTAGCTTCCTACCTTGCAA
LOC_Os12g34310
OsAffx.19963.1.S1_at--918--311Chr12:20764996..20765020 (25 bp)
ATACGTCTCATGCATCTGCTACTAG
LOC_Os12g34310
OsAffx.19963.1.S1_at--534--6031Chr12:20765115..20765139 (25 bp)
GAGATGGTCATATTCTGGCCCAGAA
LOC_Os12g34310
OsAffx.19963.1.S1_at--915--411Chr12:20765141..20765165 (25 bp)
ATCATCGCTCTGGTTTTAGTGTTCG
LOC_Os12g34310
Target Sequence 
GATCGGCTCGACGTCGAACTGACAGTGCCAGTGGGCAAGCTGATCATAGATCATGAAGATATAATGAAAGATATACCAGA
ACTTCTCAACGTTACCGACTTAAGAATAAATGTGGAGGCATCAATGAGTCCACATAGAGCTGGGGCCAGCCTAGCCAAGC
TCATTGCAAAGTGTTGCAAAGCTGAATGTCTCTCTATTAATATCAGCGACCAGGGACGTAATCAGTGTGTGAATTCTATG
TGTATCTGTGACCAACCAGAGGGTTGGGAGAAGGAAACGATCTCTCTTGAGTGCCTTCGAATTGTGGAGATCAGTAGCTT
CCTACCTTGCAAGGACCAGATACGTCTCATGCATCTGCTACTAGCAAGTGCGCCGGTGCTGGAGAGGATGACCGTAACAA
TCTACAAGCAATATGAAGACGCCAAGGATTTGGATCTTGGAATCCTCGGTTTTAGGGGGAGATGGTCATATTCTGGCCCA
GAATATCATCGCTCTGGTTTTAGTGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis