Browse Element(s) Details


Os.52252.1.S1_at

Description gb:AK065898.1
DB_XREF= gi:32975916
TID=Os.52252.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049J16, full insert sequence.
FL= gb:AK065898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3432011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34280NANA12+20746083..20746765hypothetical protein
LOC_Os12g34290OsAffx.32015.1.S1_at11/1112+20750484..20753888F-box domain containing protein
LOC_Os12g34300Os.47885.1.A1_at11/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_x_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34310OsAffx.19963.1.S1_at11/1112+20762595..20765232F-box domain containing protein
LOC_Os12g34320Os.52252.1.S1_at11/1112+20769394..20772085D-mannose binding lectin family protein, expressed
LOC_Os12g34330Os.54136.1.S1_at10/1112+20772833..20778265PHD-finger family protein, expressed
LOC_Os12g34340Os.16910.1.S1_at10/1112+20780843..20782892pentatricopeptide, putative, expressed
LOC_Os12g34350Os.11418.1.S1_at11/1112+20782970..20787310expressed protein
LOC_Os12g34360NANA12+20795523..20798205expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52252.1.S1_at--163--771Chr12:20771492..20771516 (25 bp)
ATGTGCAGATGCTGTCGCGCGTACA
LOC_Os12g34320
Os.52252.1.S1_at--691--1911Chr12:20771566..20771590 (25 bp)
ACGGGCAAGGTCGATGTGTACAGCT
LOC_Os12g34320
Os.52252.1.S1_at--44--3491Chr12:20771682..20771706 (25 bp)
CAGGACAACTGTCGCGGTGCTGAAA
LOC_Os12g34320
Os.52252.1.S1_at--763--891Chr12:20771718..20771742 (25 bp)
AGGCGAAGATCGTTCATGGCTCCCG
LOC_Os12g34320
Os.52252.1.S1_at--178--5751Chr12:20771764..20771788 (25 bp)
GACGGCAACTTCTGCCGGTTGCAAG
LOC_Os12g34320
Os.52252.1.S1_at--340--5371Chr12:20771840..20771864 (25 bp)
GAAGACCCAACATGAAGCTTGTAGT
LOC_Os12g34320
Os.52252.1.S1_at--108--8171Chr12:20771865..20771889 (25 bp)
GGAAAAGCTCCTTAATTTCTTGTGA
LOC_Os12g34320
Os.52252.1.S1_at--1156--3111Chr12:20771891..20771915 (25 bp)
AATTTCTTATGATCCTGGCAATCCA
LOC_Os12g34320
Os.52252.1.S1_at--193--5451Chr12:20771938..20771962 (25 bp)
GAACGGTGACACTTCTGTTAAATCC
LOC_Os12g34320
Os.52252.1.S1_at--564--2871Chr12:20771969..20771993 (25 bp)
AAGTGGTGACACATCTGCCATGAAA
LOC_Os12g34320
Os.52252.1.S1_at--857--10831Chr12:20772027..20772051 (25 bp)
TTGTGTTCAATAGCTCTGATCTCAT
LOC_Os12g34320
Target Sequence 
ATGTGCAGATGCTGTCGCGCGTACAGGGGACCAGGGGCTACATTGCGCCGGAGTGGGCGTCCAATCTCCCCATCACGGGC
AAGGTCGATGTGTACAGCTTCGGCGTGGTGCTCCTGGAGATTGTGAGGGGGCTCCGGGTGTCGGATTGGACCGTCGTCGA
CGGAGAAGAAGAGGAGGTGGAGATGGTTTTCAGGACAACTGTCGCGGTGCTGAAAGAGAGGTTGAGAGGCGAAGATCGTT
CATGGCTCCCGGGGTTTGTCGACCCGAGGCTGGACGGCAACTTCTGCCGGTTGCAAGCGGCGGCAATGGTGGAGCTCGCC
GTCGCCTGCGTCGAGGAGGAGAGGAGCAGAAGACCCAACATGAAGCTTGTAGTGGAAAAGCTCCTTAATTTCTTGTGATA
ATTTCTTATGATCCTGGCAATCCATAGTGGTGAGTGTCTGAGCGGTGAACGGTGACACTTCTGTTAAATCCAAAAAAAAG
TGGTGACACATCTGCCATGAAAATATGCCTGTGTAGATGTTTTCATCAAGCTATCTTGTGTTCAATAGCTCTGATCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis