Browse Element(s) Details


OsAffx.31263.1.S1_x_at

Description tigr:9639.m02932
TID=OsAffx.31263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=N-acetyltransferase homolog F16M14.6 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3228011/11acetyltransferase, GNAT family protein, expressed
LOC_Os12g343001/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32240Os.12743.1.S1_at11/1111+18547072..18551370Cytochrome P450 51, putative, expressed
LOC_Os11g32250Os.55537.1.S1_at11/1111+18554600..18555362expressed protein
LOC_Os11g32260Os.9797.1.S1_at10/1111+18556914..18566179Glycosyl hydrolases family 38 protein, expressed
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein
LOC_Os11g32320OsAffx.7273.1.S1_at11/1111+18591377..18593822expressed protein
LOC_Os11g32320OsAffx.7273.1.S1_s_at10/1111+18591377..18593822expressed protein
LOC_Os11g32330OsAffx.31267.1.S1_at8/1111+18594423..18596955hypothetical protein
LOC_Os11g32330OsAffx.14013.2.S1_at1/1111+18594423..18596955hypothetical protein
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005737cellular_componentcytoplasm
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31263.1.S1_x_at--425--6311Chr11:18575314..18575338 (25 bp)
GATGACCAGCACATGGATTCTCCTT
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--671--7931Chr11:18575300..18575324 (25 bp)
GGATTCTCCTTACTTGTGATACCAT
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--1052--9971Chr11:18575281..18575305 (25 bp)
TACCATTCTGGTCGATTGATAGGAT
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--46--6791Chr11:18575254..18575278 (25 bp)
GTTAGGATCCAAGGCATTTTGCTCT
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--403--8291Chr11:18575242..18575266 (25 bp)
GGCATTTTGCTCTTTTATGTCAGTT
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--1095--6951Chr11:18575204..18575228 (25 bp)
GTAGCTTTGCTGTAACTCTTGTAAC
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--1056--6491Chr11:18575164..18575188 (25 bp)
GATAGTATCTTATTTGACATGGCAT
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--871--851Chr11:18575146..18575170 (25 bp)
ATGGCATTATGTTTCTTTCAATCCA
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--91--3035Chr12:20758399..20758480 (24 bp)
AATGCCTTATTACATACTCCCTCCG
LOC_Os12g34300
OsAffx.31263.1.S1_x_at--87--6891Chr11:18574852..18574876 (25 bp)
GTATATTTCATTACTTGGCACTAGG
LOC_Os11g32280
OsAffx.31263.1.S1_x_at--33--9991Chr11:18574810..18574834 (25 bp)
TATGAATTTGTATACCGTTTCGAAT
LOC_Os11g32280
Target Sequence 
GATGACCAGCACATGGATTCTCCTTACTTGTGATACCATTCTGGTCGATTGATAGGATGAGTTAGGATCCAAGGCATTTT
GCTCTTTTATGTCAGTTTGATGATGCTTTTGTAGCTTTGCTGTAACTCTTGTAACATTGATGTGTTCAAAGATAGTATCT
TATTTGACATGGCATTATGTTTCTTTCAATCCATGTTAGACGGTTGAAAAAGAATGCCTTATTACATACTCCCTCCGTTT
CTAAATATTTTACATCATTGACTTTTTAGCATATGTTTGACCATTCGTCTTATTTAAAAACTTTTGTGAAATATGTAAAA
CTATATGTATACATAAAAGTATATTTAACAATGAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAAT
AAGACGAACGGTCAAACATATTTAAAAAAATCAACGGCGTCAAATATTTAGAAACGGAGGGAGTATATTTCATTACTTGG
CACTAGGAAGAAGAGTAGTTGGGGTATGAATTTGTATACCGTTTCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31263.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis