Browse Element(s) Details


Os.33966.1.S1_at

Description gb:AK073354.1
DB_XREF= gi:32983377
TID=Os.33966.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028A21, full insert sequence.
FL= gb:AK073354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3227011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32230OsAffx.31262.1.S1_at10/1111+18545405..18546851hypothetical protein
LOC_Os11g32240Os.12743.1.S1_at11/1111+18547072..18551370Cytochrome P450 51, putative, expressed
LOC_Os11g32250Os.55537.1.S1_at11/1111+18554600..18555362expressed protein
LOC_Os11g32260Os.9797.1.S1_at10/1111+18556914..18566179Glycosyl hydrolases family 38 protein, expressed
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein
LOC_Os11g32320OsAffx.7273.1.S1_at11/1111+18591377..18593822expressed protein
LOC_Os11g32320OsAffx.7273.1.S1_s_at10/1111+18591377..18593822expressed protein
LOC_Os11g32330OsAffx.31267.1.S1_at8/1111+18594423..18596955hypothetical protein
LOC_Os11g32330OsAffx.14013.2.S1_at1/1111+18594423..18596955hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33966.1.S1_at--1032--3151Chr11:18573964..18573988 (25 bp)
AATTCGAGCAGGCAGCCACTTACAT
LOC_Os11g32270
Os.33966.1.S1_at--639--2051Chr11:18573981..18574005 (25 bp)
ACTTACATCACTCATGCACCTGGAA
LOC_Os11g32270
Os.33966.1.S1_at--1093--5071Chr11:18573996..18574020 (25 bp)
GCACCTGGAACCTACTACTGTTATG
LOC_Os11g32270
Os.33966.1.S1_at--151--9111Chr11:18574088..18574112 (25 bp)
TGCTCCGTCAGTATATGCTGTCGCA
LOC_Os11g32270
Os.33966.1.S1_at--452--1112Chr11:18574129..18574153 (25 bp)
AGTGATTACTCCATGGCCAACTGAT
LOC_Os11g32270
Os.33966.1.S1_at--655--8451Chr11:18574143..18574167 (25 bp)
GGCCAACTGATGTTTCTGCTAACAA
LOC_Os11g32270
Os.33966.1.S1_at--950--6791Chr11:18574169..18574193 (25 bp)
GTTATTCTCAGACCAAGTGCTGCTG
LOC_Os11g32270
Os.33966.1.S1_at--910--251Chr11:18574218..18574242 (25 bp)
ATATGCCACCGGATGCACTAGCGAT
LOC_Os11g32270
Os.33966.1.S1_at--20--2031Chr11:18574234..18574258 (25 bp)
ACTAGCGATCCCGTATCATCGATGG
LOC_Os11g32270
Os.33966.1.S1_at--890--1111Chr11:18574315..18574339 (25 bp)
AGTGATTCGTCTCCTACATGTAGCT
LOC_Os11g32270
Os.33966.1.S1_at--970--4931Chr11:18574337..18574361 (25 bp)
GCTTGGCTAGATTGGTGGCATCCTA
LOC_Os11g32270
Target Sequence 
AATTCGAGCAGGCAGCCACTTACATCACTCATGCACCTGGAACCTACTACTGTTATGGAGCTTCCTCGGCGATCTACTCC
TACCCAGGNAACACAGCATCCTGTGATGGAAACAATGTGGCTGCTGCTCCGTCAGTATATGCTGTCGCAGCACCACCAGC
ATACCAGTGATTACTCCATGGCCAACTGATGTTTCTGCTAACAATGTTATTCTCAGACCAAGTGCTGCTGCTTCTTCATC
CTCCTGAGCTTCACATATGCCACCGGATGCACTAGCGATCCCGTATCATCGATGGTGGCCATAACCTCCCCATATAATTT
TATCATGTAATTTTTGTGCATAAGGTATTAGAGTGATTCGTCTCCTACATGTAGCTTGGCTAGATTGGTGGCATCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis