Browse Element(s) Details


OsAffx.31264.1.S1_at

Description tigr:9639.m02933
TID=OsAffx.31264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3230010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32260Os.9797.1.S1_at10/1111+18556914..18566179Glycosyl hydrolases family 38 protein, expressed
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein
LOC_Os11g32320OsAffx.7273.1.S1_at11/1111+18591377..18593822expressed protein
LOC_Os11g32320OsAffx.7273.1.S1_s_at10/1111+18591377..18593822expressed protein
LOC_Os11g32330OsAffx.31267.1.S1_at8/1111+18594423..18596955hypothetical protein
LOC_Os11g32330OsAffx.14013.2.S1_at1/1111+18594423..18596955hypothetical protein
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31264.1.S1_at--1143--5631NONE
GACACCTCATCTCACCCGAGGTTGA
NONE
OsAffx.31264.1.S1_at--101--8052Chr12:3723089..3723108 (20 bp)
GGAGAGGGCCACTGTCGTCATCGTC
NONE
OsAffx.31264.1.S1_at--581--9611Chr11:18584884..18584908 (25 bp)
TCATCGTCGATGCAGTCCACCGTCG
LOC_Os11g32300
OsAffx.31264.1.S1_at--206--7231Chr11:18584863..18584887 (25 bp)
GTCGCATCGTCGAGACCCTGCTGCA
LOC_Os11g32300
OsAffx.31264.1.S1_at--963--9111Chr11:18584845..18584869 (25 bp)
TGCTGCACCTAAGGCCAGTGGCGCA
LOC_Os11g32300
OsAffx.31264.1.S1_at--165--891Chr11:18584834..18584858 (25 bp)
AGGCCAGTGGCGCAGATCCGCTACT
LOC_Os11g32300
OsAffx.31264.1.S1_at--438--1291Chr11:18584334..18584845 (25 bp)
AGATCCGCTACTCCCGAGGCTGGCA
LOC_Os11g32300
OsAffx.31264.1.S1_at--182--4071Chr11:18584388..18584410 (23 bp)
CGAGGCTGGCACTCTGAGGAGAACA
LOC_Os11g32300
OsAffx.31264.1.S1_at--912--2193Chr12:19344903..19344927 (25 bp)
ACAAATCAAGGATGCTCCGCTGCTT
NONE
OsAffx.31264.1.S1_at--216--6353Chr12:19344913..19344937 (25 bp)
GATGCTCCGCTGCTTGACGGAGATT
NONE
OsAffx.31264.1.S1_at--596--10753Chr12:19344926..19344949 (24 bp)
TTGACGGAGATTAGCCCCAGCCACA
NONE
Target Sequence 
GACACCTCATCTCACCCGAGGTTGACGGTGGCGGATCCGTGAGGGAGAGGGCCACTGTCGTCATCGTCGATGCAGTCCAC
CGTCGCATCGTCGAGACCCTGCTGCACCTAAGGCCAGTGGCGCAGATCCGCTACTCCCGAGGCTGGCACTCTGAGGAGAA
CAAATCAAGGATGCTCCGCTGCTTGACGGAGATTAGCCCCAGCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis