Browse Element(s) Details


Os.9797.1.S1_at

Description gb:AK068415.1
DB_XREF= gi:32978433
TID=Os.9797.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.9797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151H23, full insert sequence.
FL= gb:AK098929.1 gb:AK068415.1 gb:AK061950.1 gb:AK120149.1 gb:AK102653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3226010/11Glycosyl hydrolases family 38 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32220NANA11+18534705..18535215hypothetical protein
LOC_Os11g32230OsAffx.31262.1.S1_at10/1111+18545405..18546851hypothetical protein
LOC_Os11g32240Os.12743.1.S1_at11/1111+18547072..18551370Cytochrome P450 51, putative, expressed
LOC_Os11g32250Os.55537.1.S1_at11/1111+18554600..18555362expressed protein
LOC_Os11g32260Os.9797.1.S1_at10/1111+18556914..18566179Glycosyl hydrolases family 38 protein, expressed
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9797.1.S1_at--416--8811NONE
TGTTGCATTGCTTACTCTTCAGGAA
NONE
Os.9797.1.S1_at--481--5051Chr11:18565363..18565387 (25 bp)
GAAGACGGAACTGTTCTTCTTCGGT
LOC_Os11g32260
Os.9797.1.S1_at--140--6611Chr11:18565386..18565497 (25 bp)
GTTGGCTCACCTATACGAGGCTGGA
LOC_Os11g32260
Os.9797.1.S1_at--135--5131Chr11:18565500..18565524 (25 bp)
GCACAAGGATCTTTCAGCTCTAGCT
LOC_Os11g32260
Os.9797.1.S1_at--670--4811Chr11:18565516..18565540 (25 bp)
GCTCTAGCTAGCGTCGACCTGAAGA
LOC_Os11g32260
Os.9797.1.S1_at--543--5611Chr11:18565669..18565693 (25 bp)
GACAAGCCTATCAGCGAACCAAGAA
LOC_Os11g32260
Os.9797.1.S1_at--382--4031Chr11:18565774..18565798 (25 bp)
CGTAGATCCTTCCAAGCTCGTCGTT
LOC_Os11g32260
Os.9797.1.S1_at--1048--6391Chr11:18565799..18565823 (25 bp)
GATCTGGGCCCCATGGAGATACGCA
LOC_Os11g32260
Os.9797.1.S1_at--485--1271Chr11:18565815..18565839 (25 bp)
AGATACGCACATTCCTCATCAATTT
LOC_Os11g32260
Os.9797.1.S1_at--794--8951Chr11:18565875..18565899 (25 bp)
TGACATGGCCTTGGCACCAATGTTT
LOC_Os11g32260
Os.9797.1.S1_at--310--571Chr11:18565993..18566017 (25 bp)
ATCCAACCACTGAGCCCTGTTTGTA
LOC_Os11g32260
Target Sequence 
TGTTGCATTGCTTACTCTTCAGGAACTTGAAGACGGAACTGTTCTTCTTCGGTTGGCTCACCTATACGAGGCTGGAGAGC
ACAAGGATCTTTCAGCTCTAGCTAGCGTCGACCTGAAGAGAGTATTTCCAGACAAGAAGATTGTCAAGATTGTTGAGACA
AGCCTATCAGCGAACCAAGAACGTTCAGCCATGGAGAAAAAGAGGCTGAAGTGGAAGGTGGAAGGCCCTCCTGCTGATGA
AAAGATCGTCCGGGGAGGCCCCGTAGATCCTTCCAAGCTCGTCGTTGATCTGGGCCCCATGGAGATACGCACATTCCTCA
TCAATTTCNGCCCCGCAGTCCGGCNAACAGTTGATGTGAGGGGTGACATGGCCTTGGCACCAATGTTTTATTTTTAGCTT
GAGTTCTTCTCATGGTGATGAGCAATAAGAAATAATGTGGCCATGGTGATTGGTGACCGAATGCAGAGATGCACTGGTAG
CATCCAACCACTGAGCCCTGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis