Browse Element(s) Details


Os.55537.1.S1_at

Description gb:AK108278.1
DB_XREF= gi:32993487
TID=Os.55537.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C10, full insert sequence.
FL= gb:AK108278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3225011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32220NANA11+18534705..18535215hypothetical protein
LOC_Os11g32230OsAffx.31262.1.S1_at10/1111+18545405..18546851hypothetical protein
LOC_Os11g32240Os.12743.1.S1_at11/1111+18547072..18551370Cytochrome P450 51, putative, expressed
LOC_Os11g32250Os.55537.1.S1_at11/1111+18554600..18555362expressed protein
LOC_Os11g32260Os.9797.1.S1_at10/1111+18556914..18566179Glycosyl hydrolases family 38 protein, expressed
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55537.1.S1_at--907--2631Chr11:18554992..18555016 (25 bp)
AACCAACGGGCGAGTGAGCGACGAC
LOC_Os11g32250
Os.55537.1.S1_at--1147--9451Chr11:18554771..18554795 (25 bp)
TCTGTTTTTCCGTGCGGTGGCATAA
LOC_Os11g32250
Os.55537.1.S1_at--553--7531Chr11:18554755..18554779 (25 bp)
GTGGCATAAGCAACCGCAGATTTCG
LOC_Os11g32250
Os.55537.1.S1_at--539--1252Chr04:5774730..5774749 (20 bp)
AGATTTCGCGATTTTCCCAGGCGAT
NONE
Os.55537.1.S1_at--1156--10251Chr11:18554714..18554738 (25 bp)
TTTGTTCCAGACAGGCCAAATCTCT
LOC_Os11g32250
Os.55537.1.S1_at--59--2131Chr11:18554704..18554728 (25 bp)
ACAGGCCAAATCTCTGCACGCAAAA
LOC_Os11g32250
Os.55537.1.S1_at--493--5071Chr11:18554689..18554713 (25 bp)
GCACGCAAAAAACCGATTTACCGCA
LOC_Os11g32250
Os.55537.1.S1_at--1003--6531Chr11:18554675..18554699 (25 bp)
GATTTACCGCATAGGAAAACGCTTA
LOC_Os11g32250
Os.55537.1.S1_at--868--2371Chr11:18554659..18554683 (25 bp)
AAACGCTTAGTGTAGTAATGTGTAA
LOC_Os11g32250
Os.55537.1.S1_at--1160--7051Chr11:18554638..18554662 (25 bp)
GTAAGCATAACAGACAAGCCCGTGA
LOC_Os11g32250
Os.55537.1.S1_at--596--5591Chr11:18554626..18554650 (25 bp)
GACAAGCCCGTGATATAATTGAACT
LOC_Os11g32250
Target Sequence 
AACCAACGGGCGAGTGAGCGACGACGGGCGGCCCGCGGCCGTCCCTGCACGGATCCGGCGCCCGGTCGCCCTCCCCCCGC
CACGGATCCGGCACGGGAGGCTGGCGGGAGGCGCCAATGACGAGGCGGGAGCGGCGACGCTGCCGCCGCCGCCGACGAGG
CGGGAGCGACGGCGACGACCCGATCTAGGGTTTTCTTTTTTTTTTGAATTTTTTTCGGTTTTCTGTTTTTCCGTGCGGTG
GCATAAGCAACCGCAGATTTCGCGATTTTCCCAGGCGATTTGTTCCAGACAGGCCAAATCTCTGCACGCAAAAAACCGAT
TTACCGCATAGGAAAACGCTTAGTGTAGTAATGTGTAAGCATAACAGACAAGCCCGTGATATAATTGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis