Browse Element(s) Details


Os.12743.1.S1_at

Description gb:AK121491.1
DB_XREF= gi:37991114
TID=Os.12743.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) CYP51 mRNA for sterol 14-demethylase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150P16, full insert sequence.
FL= gb:AK060487.1 gb:AK121491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3224011/11Cytochrome P450 51, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32210OsAffx.31261.2.S1_at11/1111+18521252..18527884Jacalin-like lectin domain containing protein, expressed
LOC_Os11g32220NANA11+18534705..18535215hypothetical protein
LOC_Os11g32230OsAffx.31262.1.S1_at10/1111+18545405..18546851hypothetical protein
LOC_Os11g32240Os.12743.1.S1_at11/1111+18547072..18551370Cytochrome P450 51, putative, expressed
LOC_Os11g32250Os.55537.1.S1_at11/1111+18554600..18555362expressed protein
LOC_Os11g32260Os.9797.1.S1_at10/1111+18556914..18566179Glycosyl hydrolases family 38 protein, expressed
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12743.1.S1_at--189--7031Chr11:18550778..18550802 (25 bp)
GTACATCTCCTTTGGTGGCGGCAGG
LOC_Os11g32240
Os.12743.1.S1_at--961--5471Chr11:18550868..18550892 (25 bp)
GAACTTTGAGTTCGAGCTGGTCTCC
LOC_Os11g32240
Os.12743.1.S1_at--598--9411Chr11:18550972..18550996 (25 bp)
TCGTCGTCGACAACTAGGATGCCAC
LOC_Os11g32240
Os.12743.1.S1_at--324--7951Chr11:18550988..18551012 (25 bp)
GGATGCCACCTTCAACCTTAGGAGT
LOC_Os11g32240
Os.12743.1.S1_at--76--10451Chr11:18551005..18551029 (25 bp)
TTAGGAGTCGATGCTTGTCGCGCTT
LOC_Os11g32240
Os.12743.1.S1_at--125--10791Chr11:18551068..18551092 (25 bp)
TTGATCCGTGTAAGTTTCTGCCAGC
LOC_Os11g32240
Os.12743.1.S1_at--1155--7731Chr11:18551103..18551127 (25 bp)
GGTGTTTCAGTCGTTTTAGGATCCT
LOC_Os11g32240
Os.12743.1.S1_at--1148--8671Chr11:18551127..18551151 (25 bp)
TGTGATTTGCTTCCTGCCATGAAAA
LOC_Os11g32240
Os.12743.1.S1_at--894--2511Chr11:18551170..18551194 (25 bp)
AACTTCTGTACCTCTGGGTTGCTTG
LOC_Os11g32240
Os.12743.1.S1_at--109--10811Chr11:18551238..18551262 (25 bp)
TTGTACCTGAATCTTTGCATCGTCC
LOC_Os11g32240
Os.12743.1.S1_at--339--511Chr11:18551256..18551280 (25 bp)
ATCGTCCGTTATTTCATATGGCTTT
LOC_Os11g32240
Target Sequence 
GTACATCTCCTTTGGTGGCGGCAGGCACGGTTGCCTCGGTGAGCCCTTCGCCTACCTACAGATCAAGGNCATATGGACTC
ACCTGCTGAGGAACTTTGAGTTCGAGCTGGTCTCCCCCTTCCCGGAGACCAANCTGGAAAGCCATGGTCGTCGGCATCAA
GGACGANGGTGATGGTCAACTTCAAGCGGCGGAAGCTCGTCGTCGACAACTAGGATGCCACCTTCAACCTTAGGAGTCGA
TGCTTGTCGCGCTTTTCGCCTTTTTTCTCTTCTTTTCCCTTTCTGTCAGTATTTGATCCGTGTAAGTTTCTGCCAGCTTT
GTATTAGGGTGTTTCAGTCGTTTTAGGATCCTGTGATTTGCTTCCTGCCATGAAAAATCAAGCTTGATCTCTGCAACTTC
TGTACCTCTGGGTTGCTTGGCAACGATTTGTGTTTGTGTTATTAGACTTGAAGCATCCTGGATTGTACCTGAATCTTTGC
ATCGTCCGTTATTTCATATGGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis