Browse Element(s) Details


OsAffx.31261.2.S1_at

Description tigr:9639.m02926
TID=OsAffx.31261.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stripe rust resistance protein Yr10, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3221011/11Jacalin-like lectin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32170OsAffx.31261.1.S1_at11/1111+18489386..18497775NB-ARC domain containing protein, expressed
LOC_Os11g32180OsAffx.31892.2.S1_x_at2/1111+18500232..18507086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g32190OsAffx.22629.1.S1_at2/1111+18514010..18514894hypothetical protein
LOC_Os11g32190OsAffx.25917.1.S1_at1/1111+18514010..18514894hypothetical protein
LOC_Os11g32200Os.47004.1.S1_at3/1111+18516279..18518315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g32200OsAffx.13882.2.S1_at2/1111+18516279..18518315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g32210OsAffx.31261.2.S1_at11/1111+18521252..18527884Jacalin-like lectin domain containing protein, expressed
LOC_Os11g32220NANA11+18534705..18535215hypothetical protein
LOC_Os11g32230OsAffx.31262.1.S1_at10/1111+18545405..18546851hypothetical protein
LOC_Os11g32240Os.12743.1.S1_at11/1111+18547072..18551370Cytochrome P450 51, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31261.2.S1_at--840--2951Chr11:18522307..18522331 (25 bp)
AATGGGATCCCTTTCGACTTTCCAG
LOC_Os11g32210
OsAffx.31261.2.S1_at--882--5691Chr11:18522292..18522316 (25 bp)
GACTTTCCAGTCCAGGGTAATGGCA
LOC_Os11g32210
OsAffx.31261.2.S1_at--200--10571Chr11:18522256..18522280 (25 bp)
TTCTTTGGACATGCGAACCTTTATG
LOC_Os11g32210
OsAffx.31261.2.S1_at--1153--8711Chr11:18522218..18522242 (25 bp)
TGTCTATGTGACACCTTCCATGGGA
LOC_Os11g32210
OsAffx.31261.2.S1_at--739--2811Chr11:18522053..18522077 (25 bp)
AAGATTGGACCATTCGGCCGACGTG
LOC_Os11g32210
OsAffx.31261.2.S1_at--546--8531Chr11:18522030..18522054 (25 bp)
TGGAGGGAACCCTTTTGACATCAAG
LOC_Os11g32210
OsAffx.31261.2.S1_at--1078--2891Chr11:18522008..18522032 (25 bp)
AAGGTCACACCACACCAGTTGGAAA
LOC_Os11g32210
OsAffx.31261.2.S1_at--19--331Chr11:18521478..18521498 (21 bp)
ATACGATCCAGCTTGGTCCTTCAGA
LOC_Os11g32210
OsAffx.31261.2.S1_at--418--7351Chr11:18521415..18521439 (25 bp)
GTGAATTCCCCAATGTCATAACCTC
LOC_Os11g32210
OsAffx.31261.2.S1_at--723--9531Chr11:18521390..18521414 (25 bp)
TCTTACCTTTGTCACCAATACTCAT
LOC_Os11g32210
OsAffx.31261.2.S1_at--224--91Chr11:18521327..18521351 (25 bp)
ATTCCATGCTCCAATGTCGGGCAAT
LOC_Os11g32210
Target Sequence 
AATGGGATCCCTTTCGACTTTCCAGTCCAGGGTAATGGCAGCATTGTTGGCTTCTTTGGACATGCGAACCTTTATGTTGA
TGCAATAGGTGTCTATGTGACACCTTCCATGGGAACAAGGAAAGAAGAAGAAAATGTTGGGCTTACCAAGATTGGACCAT
TCGGCCGACGTGGAGGGAACCCTTTTGACATCAAGGTCACACCACACCAGTTGGAAAGCATAACAATTAGTAGTAACATT
GTAATCAATTCACTTGCATTTTCATACATAAGCCATGACAAACAACAACACATTGTAGGTCCATGGGGCAGTGGTGGTGA
GAGCAATTATACGATCCAGCTTGGTCCTTCAGAATTTTTTGTCAAAGTTTCAGGAACATTTGGTCCATTTGGTGAATTCC
CCAATGTCATAACCTCTCTTACCTTTGTCACCAATACTCATCATCAGTATGGACCTTTTGGACAAGGAGGAGGCACTCCA
TTCCATGCTCCAATGTCGGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31261.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis