Browse Element(s) Details


OsAffx.31261.1.S1_at

Description tigr:9639.m02922
TID=OsAffx.31261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stripe rust resistance protein Yr10Mla1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3217011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32140NANA11+18464466..18469378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32150Os.47463.1.S1_x_at5/1111+18470805..18475642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32150Os.14491.2.S1_x_at4/1111+18470805..18475642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g32160Os.9774.1.S1_at11/1111+18480389..18486410expressed protein
LOC_Os11g32170OsAffx.31261.1.S1_at11/1111+18489386..18497775NB-ARC domain containing protein, expressed
LOC_Os11g32180OsAffx.31892.2.S1_x_at2/1111+18500232..18507086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g32190OsAffx.22629.1.S1_at2/1111+18514010..18514894hypothetical protein
LOC_Os11g32190OsAffx.25917.1.S1_at1/1111+18514010..18514894hypothetical protein
LOC_Os11g32200Os.47004.1.S1_at3/1111+18516279..18518315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g32200OsAffx.13882.2.S1_at2/1111+18516279..18518315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g32210OsAffx.31261.2.S1_at11/1111+18521252..18527884Jacalin-like lectin domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31261.1.S1_at--30--1031Chr11:18491902..18491926 (25 bp)
AGGGATATCTTTCAACTTTCCAATC
LOC_Os11g32170
OsAffx.31261.1.S1_at--245--10051Chr11:18491819..18491843 (25 bp)
TAGGCGTCTATGTGAACCCTTGGGT
LOC_Os11g32170
OsAffx.31261.1.S1_at--58--371Chr11:18491659..18491683 (25 bp)
ATCAAGATTGGATCATTTGGCCGGG
LOC_Os11g32170
OsAffx.31261.1.S1_at--251--991Chr11:18491633..18491657 (25 bp)
AGGAGGGTGCCGTTGTGACATCAAA
LOC_Os11g32170
OsAffx.31261.1.S1_at--13--5671Chr11:18491617..18491641 (25 bp)
GACATCAAAGTCACACCACAACATT
LOC_Os11g32170
OsAffx.31261.1.S1_at--1151--5411Chr11:18491535..18491559 (25 bp)
GAAGCCACGATGGACTGCAGTACAT
LOC_Os11g32170
OsAffx.31261.1.S1_at--1124--1971Chr11:18491522..18491546 (25 bp)
ACTGCAGTACATTTTAGGTCCATGG
LOC_Os11g32170
OsAffx.31261.1.S1_at--1023--9771Chr11:18491142..18491164 (23 bp)
TAAGATCAATCTTGGTCCTTCAGAA
LOC_Os11g32170
OsAffx.31261.1.S1_at--91--7751Chr11:18491081..18491105 (25 bp)
GGTGAATTCCCCATTGTTATAACTT
LOC_Os11g32170
OsAffx.31261.1.S1_at--1160--8011Chr11:18491006..18491030 (25 bp)
GGAGGAGGGACTCCTTTCCATGCAC
LOC_Os11g32170
OsAffx.31261.1.S1_at--54--7871Chr11:18489457..18489481 (25 bp)
GGTATATCCCTCGATTTCATGTTGA
LOC_Os11g32170
Target Sequence 
AGGGATATCTTTCAACTTTCCAATCCAGGGCAATGGTAGCATTGTTGGCTTCTTTGGACATGCGGAGCTTTATATTGATG
CAATAGGCGTCTATGTGAACCCTTGGGTTGGGATATGGAAACAAGAAGAAAAGGAGGGAATCATCAAGATTGGATCATTT
GGCCGGGGAGGAGGGTGCCGTTGTGACATCAAAGTCACACCACAACATTTGGAAAGCATCACAATTTCAAGTAAAATTGT
TATAAATTCACTTACATTTTCATACAGAAGCCACGATGGACTGCAGTACATTTTAGGTCCATGGGGCGGTGGTGGTGAGA
ACAATTATAAGATCAATCTTGGTCCTTCAGAATTCATAACTAAAGTTCATGGAACATTTGGTCCATTTGGTGAATTCCCC
ATTGTTATAACTTCACTTACCTTTATCAATAATGCTGGTCATCAGTATGGACCTTTCGGCCAAGGAGGAGGGACTCCTTT
CCATGCACCAATATCAGGTATATCCCTCGATTTCATGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis