Browse Element(s) Details


OsAffx.31267.1.S1_at

Description tigr:9639.m02937
TID=OsAffx.31267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g323308/11hypothetical protein
LOC_Os04g282202/11hypothetical protein
LOC_Os01g592301/11retrotransposon protein, putative, unclassified
LOC_Os02g302701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein
LOC_Os11g32320OsAffx.7273.1.S1_at11/1111+18591377..18593822expressed protein
LOC_Os11g32320OsAffx.7273.1.S1_s_at10/1111+18591377..18593822expressed protein
LOC_Os11g32330OsAffx.31267.1.S1_at8/1111+18594423..18596955hypothetical protein
LOC_Os11g32330OsAffx.14013.2.S1_at1/1111+18594423..18596955hypothetical protein
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein
LOC_Os11g32360Os.14956.1.S1_at11/1111+18611153..18615087expressed protein
LOC_Os11g32370OsAffx.19119.1.S1_at11/1111+18620555..18622041hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31267.1.S1_at--202--1931Chr11:18594582..18594606 (25 bp)
ACGGTGAACACGAGGACTCTGACTG
LOC_Os11g32330
OsAffx.31267.1.S1_at--397--6191NONE
GAGGACTCTGACTGCGGAATACCCG
NONE
OsAffx.31267.1.S1_at--17--8951Chr03:30616864..30617310 (25 bp)
TGACTGCGGAATACCCGAGAATCAT
NONE
OsAffx.31267.1.S1_at--19--4231Chr11:18596098..18596122 (25 bp)
CCGAGAATCATGGTGGGTCCGCCAC
LOC_Os11g32330
OsAffx.31267.1.S1_at--868--411Chr11:18596104..18596128 (25 bp)
ATCATGGTGGGTCCGCCACTGGTCA
LOC_Os11g32330
OsAffx.31267.1.S1_at--788--1954Chr11:18596121..18596145 (25 bp)
ACTGGTCAGACCGACGGACTGGTTA
LOC_Os11g32330
OsAffx.31267.1.S1_at--421--9652Chr11:18596126..18596150 (25 bp)
TCAGACCGACGGACTGGTTAGGCTG
LOC_Os11g32330
OsAffx.31267.1.S1_at--795--5911NONE
GAGTTCGGACGCTAGGAAGGAATCC
NONE
OsAffx.31267.1.S1_at--1080--10251Chr11:18596814..18596838 (25 bp)
TTTGATTGGCAATACGACTGTGATG
LOC_Os11g32330
OsAffx.31267.1.S1_at--862--10231Chr11:18596889..18596913 (25 bp)
TATTGGGATAGCTGAGTCTCTCGAA
LOC_Os11g32330
OsAffx.31267.1.S1_at--73--6491Chr11:18596895..18596919 (25 bp)
GATAGCTGAGTCTCTCGAAGGTGGT
LOC_Os11g32330
Target Sequence 
ACGGTGAACACGAGGACTCTGACTGCGGAATACCCGAGAATCATGGTGGGTCCGCCACTGGTCAGACCGACGGACTGGTT
AGGCTGTGGAGTTCGGACGCTAGGAAGGAATCCAATTTTGATTGGCAATACGACTGTGATGATAGGAGAGAAGGTGGAGC
ATTGTTGTAGGTGGAGTCCAGAGGAAGAAATTATTGGGATAGCTGAGTCTCTCGAAGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis