Browse Element(s) Details


OsAffx.14013.2.S1_at

Description tigr:9632.m02663
TID=OsAffx.14013.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2822010/11hypothetical protein
LOC_Os10g330202/11hypothetical protein
LOC_Os10g057702/11hypothetical protein
LOC_Os11g323301/11hypothetical protein
LOC_Os05g029101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed
LOC_Os04g28220OsAffx.14013.2.S1_at10/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.30648.1.S1_at3/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.31267.1.S1_at2/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.29480.2.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.19695.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220Os.57082.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28250Os.9817.1.S1_at11/114+16506608..16507443cystatin, putative, expressed
LOC_Os04g28260OsAffx.26199.1.S1_x_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.26199.1.S1_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.2413.1.S1_x_at7/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.11796.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.28358.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14013.2.S1_at--173--9031Chr04:16492950..16492974 (25 bp)
TGCAAAGGCACGGACAGCGCGTATG
LOC_Os04g28220
OsAffx.14013.2.S1_at--548--4573Chr04:16492934..16492958 (25 bp)
GCGCGTATGGAGTACGTGCTATACA
LOC_Os04g28220
OsAffx.14013.2.S1_at--828--10171Chr04:16492915..16492939 (25 bp)
TATACACGCACATAGGCACACGGTG
LOC_Os04g28220
OsAffx.14013.2.S1_at--1128--5111Chr04:16492900..16492924 (25 bp)
GCACACGGTGTCAATTTGGAGAGCA
LOC_Os04g28220
OsAffx.14013.2.S1_at--562--3991NONE
CGGGCGGTGTACAGGAGATCATATT
NONE
OsAffx.14013.2.S1_at--28--5956Chr11:18596517..18596596 (25 bp)
GAGCAAGCGCTATGGTTCAGTCTAC
LOC_Os11g32330
OsAffx.14013.2.S1_at--161--1658Chr10:2892050..2892129 (25 bp)
AGCGCTATGGTTCAGTCTACGGATG
LOC_Os10g05770
OsAffx.14013.2.S1_at--200--10471Chr04:16490989..16491013 (25 bp)
TTACGTGGATAGCAGAGTCTCTTGA
LOC_Os04g28220
OsAffx.14013.2.S1_at--210--3931Chr04:16490395..16490419 (25 bp)
CGGCGCGGCATCTGACAGGGCATCA
LOC_Os04g28220
OsAffx.14013.2.S1_at--291--8951Chr04:16490383..16490407 (25 bp)
TGACAGGGCATCACCGCCTAGTCAA
LOC_Os04g28220
OsAffx.14013.2.S1_at--315--1791Chr04:16490371..16490395 (25 bp)
ACCGCCTAGTCAAGGGCAAGGTCCA
LOC_Os04g28220
Target Sequence 
TGCAAAGGCACGGACAGCGCGTATGGAGTACGTGCTATACACGCACATAGGCACACGGTGTCAATTTGGAGAGCAGAACC
GATGCGGGCGGTGTACAGGAGATCATATTTACCTGGAGTCCAGAACTTGATGATTGGTGCAAAGCGTTGGTTTGGCGGCG
TGGCTCACGGGCACCAGACGGGAGGCATGGTGCAGCTTTGTGGTGATCAAGGTGATGCGGTTGGCATGATGGGGATATAT
GAAATCTGCGTCACTGAAGAGGAAGAGCAAGCGCTATGGTTCAGTCTACGGATGCGGGAAAGCGAGGATGTTGGATTTAT
TAGCTCAGTTCATAAGACAACAAGGAAGAAATGGTTCTCTTCAAGTCTGCTAGGAAGAAATCCAATTTCGCTTGGCAAGA
TGACTGAGATGATAGGTGAGAAGGTGGAGCACTGTTGCAGGTGGAATCAAAAGGAAGAAATTACGTGGATAGCAGAGTCT
CTTGAAGACGGCAGCACGGGAGAAGCTGTGACGAGCAGCGGCGCGGCATCTGACAGGGCATCACCGCCTAGTCAAGGGCA
AGGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14013.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis